Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0537 ATGTCCCTTCTCAGTAGATTTTTTCACAAAAGACCTCCGGATGGGTTGCTTGAATTTGTTGAACGAGTATATATTTTTGATTCATGTTTCTCCACTGAAGTTTTGCCTGATGGCATGTATCAAATTTATCTACACGAAATTGTAAACGAGTTACACGAAGATTTCCCAGAATCATCCTTCCTTGCATTTAATTTTCGTGAGGGAGAGAAAAGGAGCCAATTTGCAGAAATTCTGTGTGAATATGATGTTATTGTCTTGGACTATCCACGACAATATGAAGGTTGCCCCCTTCTCCCGTTGTCTTTAATACAACATTTCCTCCGTGTCTCTGAGAGTTGGCTTTCACATGGGAATCAACAGAACGTCATTCTTCTCCATTGTGAGAGGGGGGGTTGGCCCCTCTTGGCTTTCCTGCTAGCTAGCTTTTTTATTTTTAAAAAATTGCAAACTGGTGAGCGCAAGACTCTTGAAATTGTTCATCGGGAAGCTCCTAAAGGGTTTTTGCAGCTCTTGTCTCCTCTAAATCCATTGCCTTCTCAGCTTCGATATCTACAGTATGTTTCAAGAAGGAATATAGCTCCAGAGTGGCCCCCTCCAGAGAGAGCTCTTTCTTTAGATTGTGTAATTCTTCGGGCCATTCCGAGCTATGATGCACAAAATGGATGCAGACCTTATATACGTATTTTTGGAAGAAATCTTCTTAGTAAGGGTGGCCTTTCTACCCAGATGCTTTTTTCCATGCCCAAGAAGAAAAATTCTCTGCGGTGCTACCGTCAGGCGGACTGTGATGTGATTAAAATAGATATCCAGTGTATGGTTCAAGGGGATGTTGTGTTGGAGTGTGTACATTTGGAAATGGAACCAGAAAGGGAAGTCATGATGTTTCGTATAATGTTCAATACTGCATTTATTCGATCAAACATACTAATGCTCAACTCTGATAACCTGGACATTCTTTGGGATTCAAAGGAACGGTATCCAAAAAGCTTTAGAGCTGAGGTTTTATTTGGGGATGTTGAAAGTGCTTCCCCTCCAAGGGCTCCCACCAGAATTTTAAATGGTGAGGAGAAAGGTGGATTGCCCATTGAAGCGTTTTCAAGAGTTCAAGAACTTTTTAGTGGAGCTGAGTGGATTGAAAATAGTGATGATGCTGCCTTGTGGTTAATAAAAAACCTTTCTATGTTTACTGATGTGAAAGAAGTGTCAAGATTCCAAAATAAACCAAGTTCATATTACTCAACACCTGACTCTGAAGATGAAAACAATACATCTAGTGCTGCTGATAGTTCAGATGAAGCAATAGATATTCTTCCGAAGCCTTTGATGGAAAAATCAACCATTTTGAATACAGATGATCAAGTTCCCATCTATTCTAGCAATGGTGTTGCACGTGATGTGAATCTTGCCTCAGGACCACTTGATCAAGCACCTGTTCAATGTGTTCAGTCATCTGCTCATCAACATGCTTTATTTCTGACTAACGAATCCTTACCTTCAGAACAACCATCGCTTCTCCCTCCCTCAGTTACTACCACCGAAAGTTTGACACCTCCTCTGCCCCCTTTATTCGGTATGTCCCATGAAGTTTCTTCAAATACTTCACTTCGATCTCCACTTTTGAACCCATCAAATGTTGTTTTGTCCTCACACTCTATTAACAGTTACTCTGGACCACCTCATCCCCCTCCACCTCCACCTCCTTTTATTTCTTGTAAAGGCCCCAAATCAACTTCATCACTCCCGTCTACTTCTGAATCTTATCAAGAAACTTTGTTGCAAACTCCACCTTCATCCCTTCTGTCCTCTTTGAATTCTACATCTAGTGCTAGTACAAAGTGTGGTGCACCTCCACCTCCCCCTCCTCCTCCCACTTTAATGCCTTCCATAAGTAATAACTCTAGTAATGTCTCTACACTGCCTTTGGATCCACCTCCAATGGGATGCATGAGTCCAAGTTTGATTCCACCACCTCCACCCCCTCCGCCAACGCTCAAGCCATCCGCTACTCCTCCCCCACTTCCACCTCCACCTCCTCTACCTACGTCAAAACCTTCTAGTACTAATGCTCCACCACCTCCACCCCCTCCGCCAACGCTCAAGCCATCCGCTACTCCTCCCCCACCTCCTCCTCCACCTCCTCCACCTACGTCAAAACCTTCTAGTACTAATGCTCCACCACCTCCACCACCTCCACCTCCTTCACTTACATCAAAGCCTCCTATTGCTCCTCCTCCACCACCCCAACCTCCACCCCTTGCAGCAAAGCTTCCTAGTTCTGCTCCTACACCACCTCCACCTCCACCAAAGCCTTCTAGTACTCCTCCTCCACCACCTCCACCTACAACAAGGCCTTCTAATACTCCTCCTCCACCACCTCCACCTCCCACAAAGCCTCCTACTACTCCTCCTCCACCACCAACAAAGCCTCCCGGTGCTCCTCCTCCACCACCTCCACCTGCACTCAAGCCTCCCAATGCTCCACCACCACCTCCACCTCAAACAAGGCGTCCTGGTGCCCCGCCTCCTCCTCCATTTCCAAGTTGCGGTGCCACCCCACCACCCCCACCACCACCGAAGCCTCCTTGTGCTCCTTCACTACCTAATCATGGTGCTACACCAGCTCCACCCCCTCCTCCTGGAGGAAAGGGTTTGAATGCGCCACCACCGCCTCCTCCATCTATCGGAAGAGGGAGGGTTTCTTCAATGTCGACAGGTCAAGCACGGGGACGAGTTGCTGGGGGAGTTGCAATTGCTCCAAAGAAAAATTCATTAAAGCCGCTGCATTGGGTCAAAGTTACAAGAGCAATGCAAGGGAGTTTATGGGCTGATTCTCAAAAGCAGGAAAATAAATCAAGGGCCCCTGAAATAGACATATCAGAACTAGAAAGTCTCTTCTCAGCAGCTACCGCTTCAGATGCGAGTGGTAATAAAGGTGTTGGTCGACGTGGTTCCAACATTAACAAACCTGAGAAAGTACAACTGGTTGACTTGCGGCGAGCATATAACTGTGAAATAATGCTCTCAAAAATAAAAATTCCCTTGTCAGATATGATTTATGCAGTTCTCGCACTGGATTCTTCTGCCCTTGACATTGACCAGGTTGAGAATCTCATCAAATTTTGTCCCACAAAGGAAGAGATGGAGACATTGAAGAACTATACAGGTGACAAGGGAATGCTCGGGAAATGTGAACAGTTTTTCATGGAGTTAATGAAGGTTCCTCGAGTAGAGTCCAAGTTACGAGTATTTGCTTTTAAATTAACATTTTCAAGTCAGGTGAATGATTTGAGAAATAATTTAAGTACAATTAACGATGCTACTAGAGAGGTGAAGGAATCTGCAAAATTACGTCAGATAATGCAGACAATTCTTACATTGGGAAATGCCTTGAATCAGGGCACTGCACGAGGCTCTGCTATAGGATTCAAATTGGACAGCCTTCTTAAATTATCTGATACTCGTGCAAAAAACAACAAAATGACTTTAATGCATTACTTGTGCAAGCTCCTTGCTGAGAAAATGCCAGAGTTGTTGGATTTTGACAAGGATCTTCTTCATTTAGAAGCTGCCTCTAAGGCTGTGAGTAAAGGTCTTGAAAAGGTTGAGCAAGAACTTGCTGCTTCAGTAAATGATGGTGCTATCTCTTTAGGTTTCCAAAAGGTGTTGAAGACTTTTCTTGATACTGCTGAAGCTGAAGTTAGGACACTCATCTCCTTGTATACTGAAGTGGGTAGAAATGCCGACTCCTTGTCCCAGTACTTTGGGGAGGACCCTGCACGATGTCCCTTTGAGCAAGTGACTCAAATCTTGATCGTCTTTGTCAAGATGTTCAAGAAATCAAAAGAGGAAAATGAAAGGCTGGCTGATGCTGAAAGGAAAAAGTTGGAGAAGGAATTAGCCGTGAAAGAAGGGAGTGCTGCTAGAGCATGGTGA 3933 44.62 MSLLSRFFHKRPPDGLLEFVERVYIFDSCFSTEVLPDGMYQIYLHEIVNELHEDFPESSFLAFNFREGEKRSQFAEILCEYDVIVLDYPRQYEGCPLLPLSLIQHFLRVSESWLSHGNQQNVILLHCERGGWPLLAFLLASFFIFKKLQTGERKTLEIVHREAPKGFLQLLSPLNPLPSQLRYLQYVSRRNIAPEWPPPERALSLDCVILRAIPSYDAQNGCRPYIRIFGRNLLSKGGLSTQMLFSMPKKKNSLRCYRQADCDVIKIDIQCMVQGDVVLECVHLEMEPEREVMMFRIMFNTAFIRSNILMLNSDNLDILWDSKERYPKSFRAEVLFGDVESASPPRAPTRILNGEEKGGLPIEAFSRVQELFSGAEWIENSDDAALWLIKNLSMFTDVKEVSRFQNKPSSYYSTPDSEDENNTSSAADSSDEAIDILPKPLMEKSTILNTDDQVPIYSSNGVARDVNLASGPLDQAPVQCVQSSAHQHALFLTNESLPSEQPSLLPPSVTTTESLTPPLPPLFGMSHEVSSNTSLRSPLLNPSNVVLSSHSINSYSGPPHPPPPPPPFISCKGPKSTSSLPSTSESYQETLLQTPPSSLLSSLNSTSSASTKCGAPPPPPPPPTLMPSISNNSSNVSTLPLDPPPMGCMSPSLIPPPPPPPPTLKPSATPPPLPPPPPLPTSKPSSTNAPPPPPPPPTLKPSATPPPPPPPPPPPTSKPSSTNAPPPPPPPPPSLTSKPPIAPPPPPQPPPLAAKLPSSAPTPPPPPPKPSSTPPPPPPPTTRPSNTPPPPPPPPTKPPTTPPPPPTKPPGAPPPPPPPALKPPNAPPPPPPQTRRPGAPPPPPFPSCGATPPPPPPPKPPCAPSLPNHGATPAPPPPPGGKGLNAPPPPPPSIGRGRVSSMSTGQARGRVAGGVAIAPKKNSLKPLHWVKVTRAMQGSLWADSQKQENKSRAPEIDISELESLFSAATASDASGNKGVGRRGSNINKPEKVQLVDLRRAYNCEIMLSKIKIPLSDMIYAVLALDSSALDIDQVENLIKFCPTKEEMETLKNYTGDKGMLGKCEQFFMELMKVPRVESKLRVFAFKLTFSSQVNDLRNNLSTINDATREVKESAKLRQIMQTILTLGNALNQGTARGSAIGFKLDSLLKLSDTRAKNNKMTLMHYLCKLLAEKMPELLDFDKDLLHLEAASKAVSKGLEKVEQELAASVNDGAISLGFQKVLKTFLDTAEAEVRTLISLYTEVGRNADSLSQYFGEDPARCPFEQVTQILIVFVKMFKKSKEENERLADAERKKLEKELAVKEGSAARAW 1310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3764208 3774302 + Conep12aG0055800.1 Cone12ag0537 449381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0537 1310 MobiDBLite consensus disorder prediction 495 517 - -
Cone12ag0537 1310 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cone12ag0537 1310 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
Cone12ag0537 1310 Gene3D Formin, FH2 domain 916 1288 IPR042201 -
Cone12ag0537 1310 MobiDBLite consensus disorder prediction 556 571 - -
Cone12ag0537 1310 MobiDBLite consensus disorder prediction 407 430 - -
Cone12ag0537 1310 ProSiteProfiles Formin homology-2 (FH2) domain profile. 914 1303 IPR015425 -
Cone12ag0537 1310 MobiDBLite consensus disorder prediction 551 917 - -
Cone12ag0537 1310 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 18 188 IPR029021 -
Cone12ag0537 1310 MobiDBLite consensus disorder prediction 495 536 - -
Cone12ag0537 1310 Pfam Formin Homology 2 Domain 919 1278 IPR015425 -
Cone12ag0537 1310 PANTHER FORMIN-J 1 697 IPR051144 -
Cone12ag0537 1310 Pfam C2 domain of PTEN tumour-suppressor protein 198 337 IPR014020 -
Cone12ag0537 1310 MobiDBLite consensus disorder prediction 644 895 - -
Cone12ag0537 1310 Gene3D - 197 342 - -
Cone12ag0537 1310 Coils Coil 1278 1300 - -
Cone12ag0537 1310 SMART PTEN_C2_2 198 338 IPR014020 -
Cone12ag0537 1310 SUPERFAMILY Formin homology 2 domain (FH2 domain) 927 1297 - -
Cone12ag0537 1310 MobiDBLite consensus disorder prediction 407 431 - -
Cone12ag0537 1310 MobiDBLite consensus disorder prediction 572 612 - -
Cone12ag0537 1310 SMART it6_source 509 1309 IPR015425 -
Cone12ag0537 1310 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 338 IPR035892 -
Cone12ag0537 1310 MobiDBLite consensus disorder prediction 613 627 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0537 Cone-Chr12:3764208 Cone8ag0537 Cone-Chr8:3939933 0 dispersed
Cone12ag0537 Cone-Chr12:3764208 Cone17ag0984 Cone-Chr17:7577492 2.86E-274 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0537 K28090 - cit:102607623 768.459