Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0544 ATGGTTGATGCAGCTGATAAATTAGCGTATTTTCAAGCAATCACGGGCATAGAAGATCCCGAATTCTGCACAGAGGTTCTTTCTGCTCATAATTGGGACCTCGAACTCGCCATATCCGCCATAACTGGCCCTAATTCCGACCACCATGCAGCTTCCATCGCTGAATCCACATACACTGGTATCGAGGACGCTGGTGGTGGCCCTAATTCCGGTTTTGAATCACGCCAAGTCCTCCAGGAGTCCGAACCACTGGAGAATAATCCTGGTTTGGCATGGAAGATCATCAAGCTTCCAATATCTGTGATTTCTGGTAGTTTAGGGTTACTTTCTGGTGCAATTGGGCTGGGTTTATGGGCTGCCGGCGGCGTGCTCTCATACTCCCTCGGAATGGTCGGGTTGGCCTCTTCTAATCGAAACGGTGAGTCCTCCGCTCGTCTGGTTTCTGTTTCTGCAGCAGCATCGGAGGCCATGGATTTCATGGCGGCTTTTGAGAGGGATTATGGAACGATAGGACCAAATTTTGTGAGAGAGGGGTTCATGGATGCGTTGCAGAGGTCGAAAAATGCGTTTAAGCTTTTGTTTGTGTATCTACACTCGCCGGATCATCCAGATACGCCATTGTTCTGTGAGAGAACTCTTTGTTCGGAAACGGTTGCCGCATTTGTGAACGAAAATTTTGTAGCTTGGGGAGGGAGTATCAGAGCCAGCGAAGGTTTCAAGATGAGTAATAGTTTTAAGGCGTCGAGGTTTCCGTTTTGTGCTGTGGTTATGGCTGCTGCGAACCAGAGGATTGCACTGCTTCAGCAGGTTGAGGGACCACAATCTGCTGAAGAAATGCTTGCAATTCTACAGATAGTACTTGAAGAAAGTTCCCCTGTCCTTGTTTCTGCAAGACTTGAAGCTGAAGAAAGAAGAAATAACATGCGTTTGAGAGAGGAGCAAGATGCTGCATACAGAGCAGCACTTGAAGCGGATCAAGCAAGGGAACGCCAGAGGAAAGAGGAGCAAGAACGGCTTAAAAGGGAAACTGATGAAGCTGAGAGGAAGAGGAAAGAGGAGGAAGAGGCCCGTGAGAGAGCAGCACGTGAAGCTGCTGAAAGGGAGGCTGCTCTAGCTAAGAAGCGCCGGGAGAAAGCTTTGTCACTTGGTGTTGAACCCGAGAAAGGACCTAATGTTACACAAGTGTTAGTGCGGTTCCCATCTGGTGAAAGAAAGGAAAGGAGGTTTCAAAGTAGTGTGACAATACAGTCTGTGTATGACTACGTCGACTCATTGGATTGTTTAGAGGTTGAGAACTATAGCCTCGTGTCCAATTTCCCTCGAGTTGTTTATGGCCCGGAAATGCTCTCCTTGTCACTGAAAGAAGCAGGTTTGCATCCTCAAGCTAGCCTTTTTGTGGAGCTCAACTCTTGA 1413 48.05 MVDAADKLAYFQAITGIEDPEFCTEVLSAHNWDLELAISAITGPNSDHHAASIAESTYTGIEDAGGGPNSGFESRQVLQESEPLENNPGLAWKIIKLPISVISGSLGLLSGAIGLGLWAAGGVLSYSLGMVGLASSNRNGESSARLVSVSAAASEAMDFMAAFERDYGTIGPNFVREGFMDALQRSKNAFKLLFVYLHSPDHPDTPLFCERTLCSETVAAFVNENFVAWGGSIRASEGFKMSNSFKASRFPFCAVVMAAANQRIALLQQVEGPQSAEEMLAILQIVLEESSPVLVSARLEAEERRNNMRLREEQDAAYRAALEADQARERQRKEEQERLKRETDEAERKRKEEEEARERAAREAAEREAALAKKRREKALSLGVEPEKGPNVTQVLVRFPSGERKERRFQSSVTIQSVYDYVDSLDCLEVENYSLVSNFPRVVYGPEMLSLSLKEAGLHPQASLFVELNS 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3854410 3858620 - Conep12aG0056500.1 Cone12ag0544 449388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0544 470 CDD UBX 395 467 - -
Cone12ag0544 470 Pfam UBX domain 388 467 IPR001012 GO:0005515(InterPro)
Cone12ag0544 470 Gene3D - 2 48 - -
Cone12ag0544 470 ProSiteProfiles UBX domain profile. 388 466 IPR001012 GO:0005515(InterPro)
Cone12ag0544 470 PANTHER FAS-ASSOCIATED PROTEIN 8 467 IPR050730 GO:0005783(PANTHER)|GO:0030433(PANTHER)|GO:0043130(PANTHER)
Cone12ag0544 470 Pfam Fas-associated factor 1 159 231 IPR049483 -
Cone12ag0544 470 Gene3D Glutaredoxin 142 303 - -
Cone12ag0544 470 Gene3D - 391 469 - -
Cone12ag0544 470 MobiDBLite consensus disorder prediction 324 370 - -
Cone12ag0544 470 Pfam UBA-like domain 6 40 - -
Cone12ag0544 470 Coils Coil 319 382 - -
Cone12ag0544 470 CDD UAS 174 289 - -
Cone12ag0544 470 CDD UBA_FAF 11 42 - -
Cone12ag0544 470 SMART ubx_3 386 468 IPR001012 GO:0005515(InterPro)
Cone12ag0544 470 SUPERFAMILY Ubiquitin-like 351 467 IPR029071 -
Cone12ag0544 470 SMART 45neu3 158 284 IPR006577 -
Cone12ag0544 470 SUPERFAMILY Thioredoxin-like 153 298 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0544 K18726 - - csv:101203982 594.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0544 Cone-Chr12:3854410 Cone16ag0087 Cone-Chr16:470982 2.34E-57 dispersed
Cone12ag0544 Cone-Chr12:3854410 Cone8ag0541 Cone-Chr8:3983151 5.64E-278 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g218 . . . . . . Bma07g00995 . . . Cma02g00934 Cma15g01308 Car02g00683 Car15g01178 . . Cpe05g00779 . . . . . . . . . . . . . . . Cone12ag0544 . . . Csa05g00177 Chy09g01319 . Blo03g00816 . . Bda09g00683 Bpe08g00875 . . . . Cmo02g00943 Cmo15g01375 . . . . . . Bhi12g00100 . . Lac11g1941 Hepe06g1448 . Lcy12g1536 Cla01g00157 Cam01g0162 Cec01g0159 Cco01g0164 Clacu01g0158 Cmu01g0157 Cre09g2349 Lsi09g00149 . . Cme09g01868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006818 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 37