Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0550 ATGGGCGGGATGGGAGGCAATAAGAGAACTTACTCTGCTAATTCCGATGACTACAAGCTTCTCGAGGAGGTCGGTCATGGCGCCAGTGCGACGGTTTTCAGAGCGATCTATCTTCCATTCAATGAAGTTGTTGCTATCAAGTGCTTGGATCTCGATCGCTGCAATAGCAATCTGGATGATGTACGAAGGGAGGCTCAAACAATGAGTTTGATAGATCACCCAAATGTTGTAAGGTCATACTGTTCATTTGTTGTTGAACGACACCTTTGGGTGGTCATGCCATTCCTGGCAGAAGGTTCTTGTTTGCACCTAATGAAGATAGCGTATCCAAATGGCTTTGAAGAGGCTGCTATTGGTTCTATACTAAAGGAAACTCTTAAAGCTTTGGAGTACCTTCATCGCCAAGGACATATTCACCGGGACGTTAAGGCTGGAAATATACTACTTGATACTAATGGGACAGTGAAGCTTGCAGATTTTGGTGTTTCAGCTTGCATGTTTGATGCAGGTGATAGACAACGCTCCAGAAATACCTTTGTAGGGACCCCATGCTGGATGGCACCAGAGGTACTACAGCCGGGAAGTGGATACAATTCGAAGGCTGACATTTGGTCCTTTGGTATAACTGCACTAGAGTTGGCCCATGGTCATGCACCATTCTCAAAATACCCTCCAATGAAGGTACTCCTGATGACCATACAAAATGCTCCTCCGGGGCTGGATTATGATCGTGATAAAAGATTTTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTGGTGAAAGATCAAGCCAAGAGGCCGACGGCTGAGAAGCTATTGAAACACTCATTTTTCAAGAATGCAAAGCCTCCAGATCTTTCTGTGAAGAAACTATTTGCTGACTTGCCTCCTCTTTGGAACCGTGTAAAGGCCCTCCAGCTTAAGGATGCAGCACAATTGGCTTTAAGGAAAATGCCATCAGCAGAACAAGAAGCACTATCACAGAGTGAGTACCAGCGAGGAGTTAGTGCATGGAATTTCGATGTTGAAGATTTGAAAGCCCAAGCCTCACTGGTGCATGATGATGATGATATGACAGAGATGAAGGAAGAGGAAGAGAGTGTGAAATCGTCTACTAGTGATAAGGATGAAAATGATACCCTATCTGGTTTGAGGAAATGGACCTCGAGTAATGGATCACATCAGGCTGAGCGACGAGTGCTGGTAAGTGGAAAGGACTTGCCACCAGTTGAATGCTTGACCAAAAAGGGCAAGATTCTAGAAAATGATTTGTTGGAAACTAGTTCCCAAGAACGTGTTCCAATGAAAATTGGAGCATATTCTGAGGCAACAACATCAACTTCAGGACAAGATATTTTACACTCCAAGACTGAAACTCAATCGGTGAAAAGTCGTCAAACTCAGAGTGGGCCCCTCATTCCTGGTATCGCCCTTGGTCAATCAATATCAGAAAGATGGCGTAACTCTGAGAGGTCTGAGAATGAAACTCGACCAACTGCCGATAAAGCGTATCGTGAAGTACGGAGAGCGCCAAGCTTGAGTGGTCCATTGATGCTGCCTAACCGAGCTTCAGCAAACAGCTTATCAGCTCCCATAAAATCGTCTGGAGGGTATAGAGATTCGTTAGATGAGAAATCAAAGGCCAATCTTGTGCAAATTAAAGGAAGATTTTCAGTTACATCAGAAAACTTGGATCTTGTGAAGGATATTCCCTTGAGTACAGTTCCACGTCGGTCCTCACAGGGATCACCACTGAGGAAGTCGGCTAGTGTTGGTGATTGGATATTTGATTCCAAGAAAATGCCCGTTGGTCAGGCAGCAAAGGAAGTTTACAACAGTAATATACCTGCATCAGTCATCTTGTCTCATCTTCAGAATATTTTTCAGCAAACATCTATTCAACAGGATCTCATTATTAATTTGTTGAATGGCTTGCAATCTTCCGAGGTAGTAGAAGCTACACAAGATGCAAAGATGCCACCGCTTCCTCAAAGCTCAGAGAACAATGGAACTGTTGACATGACAGCTTCCGAGAGAGAGCGTTTGCTAGTTCTCAAGATCTCCGAACTTCAAACCAGGATGATGCATTTGACTAGTGAACTAACTTCTGAAAAATTGAAGTACATACAACTACAAGAGCAGCTCAATACAGTTTATGGTCAAGAAGAAGATATGGGACAGGAAGGAAATACCTAA 2199 43.66 MGGMGGNKRTYSANSDDYKLLEEVGHGASATVFRAIYLPFNEVVAIKCLDLDRCNSNLDDVRREAQTMSLIDHPNVVRSYCSFVVERHLWVVMPFLAEGSCLHLMKIAYPNGFEEAAIGSILKETLKALEYLHRQGHIHRDVKAGNILLDTNGTVKLADFGVSACMFDAGDRQRSRNTFVGTPCWMAPEVLQPGSGYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKRFSKSFKEMVAMCLVKDQAKRPTAEKLLKHSFFKNAKPPDLSVKKLFADLPPLWNRVKALQLKDAAQLALRKMPSAEQEALSQSEYQRGVSAWNFDVEDLKAQASLVHDDDDMTEMKEEEESVKSSTSDKDENDTLSGLRKWTSSNGSHQAERRVLVSGKDLPPVECLTKKGKILENDLLETSSQERVPMKIGAYSEATTSTSGQDILHSKTETQSVKSRQTQSGPLIPGIALGQSISERWRNSERSENETRPTADKAYREVRRAPSLSGPLMLPNRASANSLSAPIKSSGGYRDSLDEKSKANLVQIKGRFSVTSENLDLVKDIPLSTVPRRSSQGSPLRKSASVGDWIFDSKKMPVGQAAKEVYNSNIPASVILSHLQNIFQQTSIQQDLIINLLNGLQSSEVVEATQDAKMPPLPQSSENNGTVDMTASERERLLVLKISELQTRMMHLTSELTSEKLKYIQLQEQLNTVYGQEEDMGQEGNT 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3937856 3956304 + Conep12aG0057100.1 Cone12ag0550 449394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0550 732 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
Cone12ag0550 732 MobiDBLite consensus disorder prediction 443 476 - -
Cone12ag0550 732 MobiDBLite consensus disorder prediction 384 398 - -
Cone12ag0550 732 FunFam serine/threonine-protein kinase BLUS1-like isoform X2 99 329 - -
Cone12ag0550 732 MobiDBLite consensus disorder prediction 352 399 - -
Cone12ag0550 732 Gene3D Phosphorylase Kinase; domain 1 7 95 - -
Cone12ag0550 732 Pfam Protein kinase domain 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0550 732 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 8 712 IPR047173 GO:0043539(InterPro)
Cone12ag0550 732 MobiDBLite consensus disorder prediction 443 475 - -
Cone12ag0550 732 Gene3D Transferase(Phosphotransferase) domain 1 99 328 - -
Cone12ag0550 732 ProSiteProfiles Protein kinase domain profile. 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0550 732 SUPERFAMILY Protein kinase-like (PK-like) 16 334 IPR011009 -
Cone12ag0550 732 SMART serkin_6 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0550 732 CDD STKc_OSR1_SPAK 16 279 - -
Cone12ag0550 732 MobiDBLite consensus disorder prediction 352 383 - -
Cone12ag0550 732 FunFam Serine/threonine-protein kinase BLUS1 7 95 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0550 Cone-Chr12:3937856 Cone18ag1363 Cone-Chr18:9363976 2.79E-167 dispersed
Cone12ag0550 Cone-Chr12:3937856 Cone8ag0549 Cone-Chr8:4082559 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81953 PF02732 ERCC4 7.00E-21 CL0236 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0550 - - - 0.0