Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0550 ATGGGCGGGATGGGAGGCAATAAGAGAACTTACTCTGCTAATTCCGATGACTACAAGCTTCTCGAGGAGGTCGGTCATGGCGCCAGTGCGACGGTTTTCAGAGCGATCTATCTTCCATTCAATGAAGTTGTTGCTATCAAGTGCTTGGATCTCGATCGCTGCAATAGCAATCTGGATGATGTACGAAGGGAGGCTCAAACAATGAGTTTGATAGATCACCCAAATGTTGTAAGGTCATACTGTTCATTTGTTGTTGAACGACACCTTTGGGTGGTCATGCCATTCCTGGCAGAAGGTTCTTGTTTGCACCTAATGAAGATAGCGTATCCAAATGGCTTTGAAGAGGCTGCTATTGGTTCTATACTAAAGGAAACTCTTAAAGCTTTGGAGTACCTTCATCGCCAAGGACATATTCACCGGGACGTTAAGGCTGGAAATATACTACTTGATACTAATGGGACAGTGAAGCTTGCAGATTTTGGTGTTTCAGCTTGCATGTTTGATGCAGGTGATAGACAACGCTCCAGAAATACCTTTGTAGGGACCCCATGCTGGATGGCACCAGAGGTACTACAGCCGGGAAGTGGATACAATTCGAAGGCTGACATTTGGTCCTTTGGTATAACTGCACTAGAGTTGGCCCATGGTCATGCACCATTCTCAAAATACCCTCCAATGAAGGTACTCCTGATGACCATACAAAATGCTCCTCCGGGGCTGGATTATGATCGTGATAAAAGATTTTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTGGTGAAAGATCAAGCCAAGAGGCCGACGGCTGAGAAGCTATTGAAACACTCATTTTTCAAGAATGCAAAGCCTCCAGATCTTTCTGTGAAGAAACTATTTGCTGACTTGCCTCCTCTTTGGAACCGTGTAAAGGCCCTCCAGCTTAAGGATGCAGCACAATTGGCTTTAAGGAAAATGCCATCAGCAGAACAAGAAGCACTATCACAGAGTGAGTACCAGCGAGGAGTTAGTGCATGGAATTTCGATGTTGAAGATTTGAAAGCCCAAGCCTCACTGGTGCATGATGATGATGATATGACAGAGATGAAGGAAGAGGAAGAGAGTGTGAAATCGTCTACTAGTGATAAGGATGAAAATGATACCCTATCTGGTTTGAGGAAATGGACCTCGAGTAATGGATCACATCAGGCTGAGCGACGAGTGCTGGTAAGTGGAAAGGACTTGCCACCAGTTGAATGCTTGACCAAAAAGGGCAAGATTCTAGAAAATGATTTGTTGGAAACTAGTTCCCAAGAACGTGTTCCAATGAAAATTGGAGCATATTCTGAGGCAACAACATCAACTTCAGGACAAGATATTTTACACTCCAAGACTGAAACTCAATCGGTGAAAAGTCGTCAAACTCAGAGTGGGCCCCTCATTCCTGGTATCGCCCTTGGTCAATCAATATCAGAAAGATGGCGTAACTCTGAGAGGTCTGAGAATGAAACTCGACCAACTGCCGATAAAGCGTATCGTGAAGTACGGAGAGCGCCAAGCTTGAGTGGTCCATTGATGCTGCCTAACCGAGCTTCAGCAAACAGCTTATCAGCTCCCATAAAATCGTCTGGAGGGTATAGAGATTCGTTAGATGAGAAATCAAAGGCCAATCTTGTGCAAATTAAAGGAAGATTTTCAGTTACATCAGAAAACTTGGATCTTGTGAAGGATATTCCCTTGAGTACAGTTCCACGTCGGTCCTCACAGGGATCACCACTGAGGAAGTCGGCTAGTGTTGGTGATTGGATATTTGATTCCAAGAAAATGCCCGTTGGTCAGGCAGCAAAGGAAGTTTACAACAGTAATATACCTGCATCAGTCATCTTGTCTCATCTTCAGAATATTTTTCAGCAAACATCTATTCAACAGGATCTCATTATTAATTTGTTGAATGGCTTGCAATCTTCCGAGGTAGTAGAAGCTACACAAGATGCAAAGATGCCACCGCTTCCTCAAAGCTCAGAGAACAATGGAACTGTTGACATGACAGCTTCCGAGAGAGAGCGTTTGCTAGTTCTCAAGATCTCCGAACTTCAAACCAGGATGATGCATTTGACTAGTGAACTAACTTCTGAAAAATTGAAGTACATACAACTACAAGAGCAGCTCAATACAGTTTATGGTCAAGAAGAAGATATGGGACAGGAAGGAAATACCTAA 2199 43.66 MGGMGGNKRTYSANSDDYKLLEEVGHGASATVFRAIYLPFNEVVAIKCLDLDRCNSNLDDVRREAQTMSLIDHPNVVRSYCSFVVERHLWVVMPFLAEGSCLHLMKIAYPNGFEEAAIGSILKETLKALEYLHRQGHIHRDVKAGNILLDTNGTVKLADFGVSACMFDAGDRQRSRNTFVGTPCWMAPEVLQPGSGYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKRFSKSFKEMVAMCLVKDQAKRPTAEKLLKHSFFKNAKPPDLSVKKLFADLPPLWNRVKALQLKDAAQLALRKMPSAEQEALSQSEYQRGVSAWNFDVEDLKAQASLVHDDDDMTEMKEEEESVKSSTSDKDENDTLSGLRKWTSSNGSHQAERRVLVSGKDLPPVECLTKKGKILENDLLETSSQERVPMKIGAYSEATTSTSGQDILHSKTETQSVKSRQTQSGPLIPGIALGQSISERWRNSERSENETRPTADKAYREVRRAPSLSGPLMLPNRASANSLSAPIKSSGGYRDSLDEKSKANLVQIKGRFSVTSENLDLVKDIPLSTVPRRSSQGSPLRKSASVGDWIFDSKKMPVGQAAKEVYNSNIPASVILSHLQNIFQQTSIQQDLIINLLNGLQSSEVVEATQDAKMPPLPQSSENNGTVDMTASERERLLVLKISELQTRMMHLTSELTSEKLKYIQLQEQLNTVYGQEEDMGQEGNT 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3937856 3956304 + Conep12aG0057100.1 Cone12ag0550 449394

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0550 732 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
Cone12ag0550 732 MobiDBLite consensus disorder prediction 443 476 - -
Cone12ag0550 732 MobiDBLite consensus disorder prediction 384 398 - -
Cone12ag0550 732 FunFam serine/threonine-protein kinase BLUS1-like isoform X2 99 329 - -
Cone12ag0550 732 MobiDBLite consensus disorder prediction 352 399 - -
Cone12ag0550 732 Gene3D Phosphorylase Kinase; domain 1 7 95 - -
Cone12ag0550 732 Pfam Protein kinase domain 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0550 732 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 8 712 IPR047173 GO:0043539(InterPro)
Cone12ag0550 732 MobiDBLite consensus disorder prediction 443 475 - -
Cone12ag0550 732 Gene3D Transferase(Phosphotransferase) domain 1 99 328 - -
Cone12ag0550 732 ProSiteProfiles Protein kinase domain profile. 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0550 732 SUPERFAMILY Protein kinase-like (PK-like) 16 334 IPR011009 -
Cone12ag0550 732 SMART serkin_6 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0550 732 CDD STKc_OSR1_SPAK 16 279 - -
Cone12ag0550 732 MobiDBLite consensus disorder prediction 352 383 - -
Cone12ag0550 732 FunFam Serine/threonine-protein kinase BLUS1 7 95 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0550 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0550 Cone-Chr12:3937856 Cone18ag1363 Cone-Chr18:9363976 2.79E-167 dispersed
Cone12ag0550 Cone-Chr12:3937856 Cone8ag0549 Cone-Chr8:4082559 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g230 . . . . . . . . Cmo06g00592 Cmo16g01271 . . . . . Cpe14g01014 . . . . . . . . . . . . . . . Cone8ag0549 Cone12ag0550 . . Lsi07g01113 . . Cme06g02394 . . . . . . . Bma12g00255 . . . Cma06g00589 Cma16g01228 Car06g00521 Car16g01156 Cpe08g00913 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone14ag1056 . 1 681 MAP Kinase Kinase Kinase Kinase AT1G53165 60.0 4.4e-211 731.9
Cone9ag0187 . 1 687 MAP Kinase Kinase Kinase Kinase AT1G53165 59.1 2.7e-208 722.6
Cone6ag0161 . 9 685 MAP Kinase Kinase Kinase Kinase AT1G53165 58.8 6.1e-205 711.4
Cone13ag0901 . 259 515 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 2.4e-68 257.7
Cone19ag0899 . 260 516 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 2.4e-68 257.7
Cone9ag0187 . 1 686 MAP Kinase Kinase Kinase Kinase AT3G15220 61.8 2.5e-222 769.2
Cone14ag1056 . 1 680 MAP Kinase Kinase Kinase Kinase AT3G15220 61.3 4.7e-221 765.0
Cone6ag0161 . 9 684 MAP Kinase Kinase Kinase Kinase AT3G15220 61.5 1.3e-218 756.9
Cone13ag0901 . 260 515 MAP Kinase Kinase Kinase Kinase AT3G15220 52.5 5.4e-68 256.5
Cone19ag0899 . 261 516 MAP Kinase Kinase Kinase Kinase AT3G15220 52.5 5.4e-68 256.5
Cone13ag0901 . 1 833 MAP Kinase Kinase Kinase Kinase AT1G69220 60.1 1.1e-248 857.1
Cone19ag0899 . 8 834 MAP Kinase Kinase Kinase Kinase AT1G69220 59.1 2.0e-247 852.8
Cone6ag0161 . 23 271 MAP Kinase Kinase Kinase Kinase AT1G69220 53.2 2.2e-68 258.1
Cone9ag0187 . 23 271 MAP Kinase Kinase Kinase Kinase AT1G69220 52.4 2.2e-68 258.1
Cone14ag1056 . 23 267 MAP Kinase Kinase Kinase Kinase AT1G69220 52.4 9.2e-67 252.7
Cone18ag1363 . 3 663 MAP Kinase Kinase Kinase Kinase AT5G14720 66.6 3.7e-247 851.7
Cone11ag0114 . 19 679 MAP Kinase Kinase Kinase Kinase AT5G14720 66.3 7.0e-246 847.4
Cone8ag0549 . 8 724 MAP Kinase Kinase Kinase Kinase AT4G24100 64.5 4.4e-246 848.2
Cone12ag0550 . 8 723 MAP Kinase Kinase Kinase Kinase AT4G24100 64.4 6.4e-245 844.3
Cone12ag0550 . 11 724 MAP Kinase Kinase Kinase Kinase AT4G10730 65.7 5.3e-249 857.8
Cone8ag0549 . 11 725 MAP Kinase Kinase Kinase Kinase AT4G10730 65.8 1.2e-248 856.7
Cone20ag1129 . 4 368 MAP Kinase Kinase Kinase Kinase AT1G70430 60.5 4.0e-128 456.1
Cone17ag0279 . 4 348 MAP Kinase Kinase Kinase Kinase AT1G70430 62.9 2.0e-127 453.8
Cone18ag0623 . 4 479 MAP Kinase Kinase Kinase Kinase AT1G70430 50.6 6.4e-126 448.7
Cone11ag0941 . 4 407 MAP Kinase Kinase Kinase Kinase AT1G70430 55.4 7.1e-125 445.3
Cone12ag0550 . 5 353 MAP Kinase Kinase Kinase Kinase AT1G70430 58.5 8.4e-118 421.8
Cone8ag0549 . 5 367 MAP Kinase Kinase Kinase Kinase AT1G70430 55.9 8.7e-115 411.8
Cone17ag0279 . 1 631 MAP Kinase Kinase Kinase Kinase AT1G79640 59.1 7.0e-206 714.5
Cone20ag1129 . 1 631 MAP Kinase Kinase Kinase Kinase AT1G79640 58.1 2.0e-205 713.0
Cone18ag0623 . 1 655 MAP Kinase Kinase Kinase Kinase AT1G79640 57.8 1.3e-204 710.3
Cone11ag0941 . 1 655 MAP Kinase Kinase Kinase Kinase AT1G79640 57.5 2.8e-199 692.6
Cone11ag0114 . 20 342 MAP Kinase Kinase Kinase Kinase AT1G23700 59.5 8.9e-102 368.2
Cone18ag1363 . 4 326 MAP Kinase Kinase Kinase Kinase AT1G23700 58.6 4.1e-99 359.4
Cone11ag0941 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.6 2.4e-86 317.0
Cone17ag0279 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.6 6.9e-86 315.5
Cone18ag0623 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.0 1.2e-85 314.7
Cone20ag1129 . 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.0 3.4e-85 313.2
Cone12ag0550 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.2 3.2e-75 280.0
Cone4ag0304 . 15 493 MAP Kinase Kinase Kinase Kinase AT4G14480 56.6 1.0e-137 487.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005064 3 0 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81953 PF02732 ERCC4 7.00E-21 CL0236 Cone PK