Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0552 ATGTGGACTCTCTCACAATTCCTCACTTTTGGACTTCAAGCATGGAAGCGAACGTTCTTCTTCGACTTTAGCACCACTTTTGTTGGAACAGGAATGATATGTTCCCACCTTGTGAACTTGTCTTTGCTGCTAGGAGCTGTGCTCTCATACGGAATTATGTGGCCTCTTATTTGCCGCCTTAAGGGTGAGTGGTTCCCTCAGACCTTACAGGTATGTGACATGAAGAGTCTATATGGGTATAAGGCATTCCTATCAGTCGCACTAATCCTAGGTGGTGGGCTCTATAACTTCTTCAAGATAACAACTTCCACAGCCATTAGTGTCCATGCCAAAATGATGAACAGAAACATAGTAACCACAGAAACCCATGGAAGCCCAATAAAAGAAGCCCCAAAACAAGATGAAATCTTCCTTCGAGAGAGCATCCCGTTATGGATCGGACCCCCTCTAGCATTTTGCAATGCTTATGGAGCCGGCCTAACCGACATAAACATGGCATATAACTATGGGAAAGCAGCCCCCTTCGTTATAGCAGCAATAAGTGGGAAACAAGATGGGCTAATTGCTGGGCTTGCTGGCAGTGGGCTCCTAAAATCAGTAGACTCAGTGGCTTGTATTTTGATGCAAGATTTTGAAACAGCCCTTCTAACATTGACATCACCTAGAGCAATTTTTGTGAGCCAAGTGATGGGGACAGTACTGGGATGCAGTATGGCTCCTCTAAGCTTCTTCCTATTCTACAAGGCATTTGATGTAGGGAATCCTAATGGAGATTTCAAAGCTCCCTTTGCTTTAATTTATCGGAACACAGCAATTCTAGGGGTCAAAGGGTTCTCTGCTTTGCCTCAACATTGTCTACAGCTCTGTTACGGGTTCTTTGCTTTTGCAATTGCAGTTAATTTGATAAGAGAGCTATTCCCGAGTAAGATTGGAAAGTGGATGCCACTTCCTATGGTGATGGGGGTCCCGTTTCTAGTCGGAGCATATTTTGCTACTGATATGCGCGTTGGGAGATAA 1017 44.44 MWTLSQFLTFGLQAWKRTFFFDFSTTFVGTGMICSHLVNLSLLLGAVLSYGIMWPLICRLKGEWFPQTLQVCDMKSLYGYKAFLSVALILGGGLYNFFKITTSTAISVHAKMMNRNIVTTETHGSPIKEAPKQDEIFLRESIPLWIGPPLAFCNAYGAGLTDINMAYNYGKAAPFVIAAISGKQDGLIAGLAGSGLLKSVDSVACILMQDFETALLTLTSPRAIFVSQVMGTVLGCSMAPLSFFLFYKAFDVGNPNGDFKAPFALIYRNTAILGVKGFSALPQHCLQLCYGFFAFAIAVNLIRELFPSKIGKWMPLPMVMGVPFLVGAYFATDMRVGR 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3966063 3967632 + Conep12aG0057300.1 Cone12ag0552 449396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0552 338 NCBIfam OPT family oligopeptide transporter 144 336 IPR004813 GO:0035673(InterPro)
Cone12ag0552 338 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 148 337 IPR045035 GO:0005886(PANTHER)|GO:0010039(PANTHER)|GO:0016020(PANTHER)|GO:0035673(InterPro)|GO:0048316(PANTHER)|GO:0051980(PANTHER)
Cone12ag0552 338 Pfam OPT oligopeptide transporter protein 9 145 IPR004813 GO:0035673(InterPro)
Cone12ag0552 338 Pfam OPT oligopeptide transporter protein 144 337 IPR004813 GO:0035673(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0552 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0552 Cone-Chr12:3966063 Cone5ag0715 Cone-Chr5:3078218 2.57E-146 dispersed
Cone12ag0552 Cone-Chr12:3966063 Cone8ag0553 Cone-Chr8:4159887 2.08E-196 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g231 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0553 Cone12ag0552 . . . Csa05g00170 Chy09g01328 . Blo03g00808 . Bda07g00148 . . Bpe11g00365 . . . . . . . . . . . Bhi12g00092 . . . . . Lcy12g1527 . . . . . . . Lsi09g00142 . . Cme09g01875
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0054387 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1