Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0558 ATGGGTAACAGCGAGAATGATAAACCAGCTAGCGACTCTAAAGAGAAGGAAGCGAAGACACCAGCTGCTACTACGCAGGAGCAATCTTCAACCACAAACACGAGCACAGTTAATCCAGACTGGTTGGGATTTCAGGCCTATTCTCCTATTCCCCCACCCGGTTACATGGCATCTAGTCCCCAAGCTCATCCATACATGTGGGGGGTTCAGCATATTATGCCTCCCTATGGCACTCCTCCACATCCATATGTTGCAATGTATCCTCATGGTGGCATATATGGTCATCCATCAATTCCTCCGGGGACATATCCTTTTAGTCCTTTCCCAATGCCTTCTCCAAATGGAATAGCTGAGGCTTCTGGAAACACACCAGGTAGCTTGGACAAGGATGGAAAGCCATCTGAGTTGAAAGAAAAATTGCCCATTAAAAGATCAAGAGGAAGTTTGGGCAGTTTGAATATGATTACTGGGAAGAATAATGACCAAGCTAAAGCATCTGGAACGTCTGCTAATGGAACATATTCAAAAAGTGCTGAGAGTGGAGGTGAAGATTCAAGTGAAGGAAGTGATGGAAGTTCCCAGAGTGAGTCGCAATTAAAGACAGGTTCCAGGGACTCTTTTGCCGCTGAAGCATCTCAAAATGGAAATTCAGGGCATGGTACTCAGAATGGAGGACCTAATACAGTTCATCCAATGGCTACAGTGCCATCTACAGGTGCTCCTGAAACTGTCCCTGGAGGTCCCACCACCAATTTAAATATTGGAATGGACTATTGGGGTGCTCCTACTGCATCCAATATCCCATCCTTGACAGGGAAAGTTTCTACATCCTCAGTTGCGGGAGGCTTGGTTACTGCTGGATCAAGGGATGGGATTCAGCCACAACTTTGGTTACAGGATGAAAGAGAGTTAAAAAGACAGAGGCGGAAGCAGTCAAACAGAGAATCTGCCCGTCGATCACGGTTGCGCAAGCAGGCCGAATGTGACGAGCTGGCTCAACGAGCTGAAGCCTTAAAGGAAGAAAATGCCAGTCTTAGATCGGAAGTCAATCAGATCAGGAGCGAGTATGAGCGGCTTCTTTCAGAGAATGCCTCCCTCAGGGAGAGACTAGAGGAACGAGCTGGAAACGAAGAGGCAAGACCTGAAAGGAAGGATCAACATTTGAGCAATGAAACGCAACAAAACATGCAATCGCAGGGTAGTAAATAG 1209 46.82 MGNSENDKPASDSKEKEAKTPAATTQEQSSTTNTSTVNPDWLGFQAYSPIPPPGYMASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPHGGIYGHPSIPPGTYPFSPFPMPSPNGIAEASGNTPGSLDKDGKPSELKEKLPIKRSRGSLGSLNMITGKNNDQAKASGTSANGTYSKSAESGGEDSSEGSDGSSQSESQLKTGSRDSFAAEASQNGNSGHGTQNGGPNTVHPMATVPSTGAPETVPGGPTTNLNIGMDYWGAPTASNIPSLTGKVSTSSVAGGLVTAGSRDGIQPQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRSEVNQIRSEYERLLSENASLRERLEERAGNEEARPERKDQHLSNETQQNMQSQGSK 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4015990 4022593 + Conep12aG0057900.1 Cone12ag0558 449402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0558 402 PANTHER G-BOX-BINDING FACTOR 3-RELATED 26 393 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(InterPro)|GO:0043565(PANTHER)
Cone12ag0558 402 MobiDBLite consensus disorder prediction 361 402 - -
Cone12ag0558 402 Pfam bZIP transcription factor 301 363 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0558 402 Coils Coil 321 376 - -
Cone12ag0558 402 MobiDBLite consensus disorder prediction 104 275 - -
Cone12ag0558 402 MobiDBLite consensus disorder prediction 302 327 - -
Cone12ag0558 402 MobiDBLite consensus disorder prediction 1 44 - -
Cone12ag0558 402 MobiDBLite consensus disorder prediction 149 234 - -
Cone12ag0558 402 MobiDBLite consensus disorder prediction 130 144 - -
Cone12ag0558 402 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 308 323 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0558 402 Pfam G-box binding protein MFMR 1 99 IPR012900 -
Cone12ag0558 402 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 303 366 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0558 402 SMART brlzneu 301 365 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0558 402 CDD bZIP_plant_GBF1 306 356 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0558 402 Pfam Disordered region downstream of MFMR 138 268 - -
Cone12ag0558 402 MobiDBLite consensus disorder prediction 361 389 - -
Cone12ag0558 402 SUPERFAMILY Leucine zipper domain 304 360 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0558 402 Gene3D - 304 357 - -
Cone12ag0558 402 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0558 Cone-Chr12:4015990 Cone8ag0602 Cone-Chr8:5238875 1.38E-237 dispersed
Cone12ag0558 Cone-Chr12:4015990 Cone8ag0496 Cone-Chr8:3532227 3.11E-132 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44458 PF01214 CK_II_beta 2.60E-78 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0558 K09060 - mdm:103403985 561.607