Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0571 ATGCAAATGGGAGCCCTGGATTTGCCCGGGCAATCAGTGATAAAGACTGGTGATCCGGAGTGGTTCTTCTTCTGCCCACGTGATCGGAAGTGTCCAAACGGCACAGGTCAAATAGGGCTACTGACGCTGGGTATCGGAAAGCTACTGGGAAAGACCGGACCATCAAATCCCACAAGAATGGGTCGAATAACATTGGTTTTCTATAGAGGCCGTGCTCCAAAGGGCGAGCGCACCAACGGGATTATGCACGAGTATCGAGCCATGGATAAGGATCTTGATGGGCCCTTTGTTCTATTCCGACTATTCCACAAGGTGGATGAGAAGCCTGTTCTTCTGAAGTATGATGAAGTAGAAAAGACGGGTTCAAATCCTACAACTACTAAGTCTTATCCTGAAGGCACATCCTCAGATCTAGTCCAAGAAACAGCATCATCTCGAGTTATGAAGGAATCAGAAGGTATAAACAGGTGGTTGACTGATGAATCAGTTAGTTTGATGCCTGATAGTAATGTACCAGCTGAAAGCTGCTCAAATAGTCTCATGGCTTCTGACATGGAGGATCATCATGGTACAGAAGAAATTCCTGGCGAGGATGGAACTAATGAACAGGATGTATCCATCTCAGAGTTGTTGGATGAGTTCTTTAATAACAATGATAATGGCACTTGCAGTGATGCAGACACTCATCTGGCCGCACTACAGCCTACTGCACAGATTGGAGCTTCTTGGTGGTATAATGATAAAGATGAGAACAGGGACTTAGTGCAAATGCAGATTCCAGTTGAAAATCACCAACCTCACATGCCAAATGGGGTTATTGGTGAACCAGGCGGTGGGATGATTAAAATCAGAAGTCGCCGAGATGAGCCACCAAATCACACAGAGAGTTTTGTAGCTCAGGGTAGTGCTCCAAGAAGAATCCGTTTGCAGTTGAATAAGAGAGTTTCACCCCGGACCATAGTCTGTGAGAGCAAAACAAGAGACTTTAGTTTGTGTGAAGAAGATTTAGCTCAATCAACTAATACAGAGGCTAAAGAAGGGAATCAAGCACCAATCTTTGATGAGCAGGAAAAGGAGAGTCAGAGTTTGAAGTTTGACACGAACGATGGAGTACTGTCTGAGGAATCCTCTAACAAGCTCAGGCGGAGAATCAAGTTAAACAGTGTACCAGATAGTGCTCAGATCAATTCATCACCCTCGTTGGAATCACCTTCTCTATCTCAAGCGTATGGAGATCCTCCTGAATGTGATTTTGCTTAG 1260 44.92 MQMGALDLPGQSVIKTGDPEWFFFCPRDRKCPNGTGQIGLLTLGIGKLLGKTGPSNPTRMGRITLVFYRGRAPKGERTNGIMHEYRAMDKDLDGPFVLFRLFHKVDEKPVLLKYDEVEKTGSNPTTTKSYPEGTSSDLVQETASSRVMKESEGINRWLTDESVSLMPDSNVPAESCSNSLMASDMEDHHGTEEIPGEDGTNEQDVSISELLDEFFNNNDNGTCSDADTHLAALQPTAQIGASWWYNDKDENRDLVQMQIPVENHQPHMPNGVIGEPGGGMIKIRSRRDEPPNHTESFVAQGSAPRRIRLQLNKRVSPRTIVCESKTRDFSLCEEDLAQSTNTEAKEGNQAPIFDEQEKESQSLKFDTNDGVLSEESSNKLRRRIKLNSVPDSAQINSSPSLESPSLSQAYGDPPECDFA 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4194713 4198239 + Conep12aG0059200.1 Cone12ag0571 449415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0571 419 MobiDBLite consensus disorder prediction 119 138 - -
Cone12ag0571 419 MobiDBLite consensus disorder prediction 389 407 - -
Cone12ag0571 419 Pfam No apical meristem (NAM) protein 7 86 IPR003441 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone12ag0571 419 Gene3D NAC domain 3 108 IPR036093 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone12ag0571 419 MobiDBLite consensus disorder prediction 350 364 - -
Cone12ag0571 419 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 174 - -
Cone12ag0571 419 ProSiteProfiles NAC domain profile. 1 104 IPR003441 GO:0003677(InterPro)|GO:0006355(InterPro)
Cone12ag0571 419 MobiDBLite consensus disorder prediction 340 419 - -
Cone12ag0571 419 SUPERFAMILY NAC domain 6 104 IPR036093 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0571 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0571 Cone-Chr12:4194713 Cone1ag1032 Cone-Chr1:55166478 2.88E-34 dispersed
Cone12ag0571 Cone-Chr12:4194713 Cone12ag0573 Cone-Chr12:4246056 2.66E-32 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g279 . . . . . . Bma07g01049 Bma14g00088 . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0571 . . . . . . Blo03g00787 Blo19g00125 Bda07g00163 Bda09g00625 Bpe08g00916 . . Bma12g00219 . . . . . . . . . . . . . . . . . . . . . . . . . . .