Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0575 ATGCAACAAGGATGTGGGGCAAGATCCCAGTCCCAATCCCAACCCCTTATTCATCCTCAATCCCAACATGGAGAGACGTCAGCACCAGATATTGTTACTAAAACTAGTACTAGTACTGATCAACCAACAAGGAGCCAGGCTAGGGCGGTAGATCACAGCGAGCAGCCGCAACTTGTTGAAGTAGCTTCGCCTATCAGCAGTCTACCTCCAGCCGTCGGAGCAGTCAATTTGGATGAGCTCGTGCCGTTATCTGTAGCTGCTGGCTGTCTGGAGGCTGATGATGACGCACTTGCGGCGGTTTCCGGAGAGGTAGGCGGTGGAAGCGGAAGCGGAGGCGGAGGCGGGGGTCTTACAGTCGGAGGGAATAGATGGCCTCGTCAAGAAACTCTTGCTCTTCTGAAGATTAGATCGGAAATGGATTCAGTTTTCCGTGAAGCCTCCGTTAAGGGCCCTCTATGGGAAGACGTTTCCAGGAAGCTTGCAGAGCATGGATACAGCAGGAGTGCCAAAAAATGCAAAGAGAAATTCGAAAACGTTCAGAAATACTACAAACGAACAAAAGAAGGTCGAGCTGGTCGCCTGGATGGCAAAAGCTACAAGTTCTTTAGCGAGCTTGAGGCCCTTTATGGCACAACAGGAGGCAATACTAGCACCCACGTCGCAGTTTCTCAGCCACAAGTTCCACCATCTTCATCCTTGTACCAACACGCCAACACAACCGCCACCACCACCTCCCAAGCATTCCCTCCTCCTCTTTCAGTCGGAATGGGTGTAAGCAACCCGATGCCAATCTCGTCGTTTAGAATTTCCCCAAGTTCTATGTCTCTAGCCCCAGCACAACTAGGAACCTTTGGTTATCACCCATCCGGCATGGGTCCCACAGTGATGACCACTCATGCGGCGCCTGCTGGCGGCGGCGTGCCTTTTGCGGGCGGTATTAGTTTCTCGTCCAACAGTCCCTCATCCTCATTCACAGGATCTGATCGAGACAATGATGATGATGATCTGGATCATGTTGAGCCATCAAACACCGCTGGAAGCAGCCGGAAACGAAAACGGGTTACCTCATCGAAAGTTCATAGGATGATGGAGTTTTTCGAAAGCCTAATGAAACAGGTCATGCAGAAGCAAGAGTTGATGCAACAGAGATTTCTCGACGCGATACACAAGAGAGAGAACGAGAGGATGCTTAGAGAAGAAGCCTGGAAGAGGCAAGAGATAACAAGGTTGGCTCAAGAGCACGATCTCATGGCTGAAGAGCGGGCCACCTCCGCGGCAAGAGATGCTGCCATTATTACCTTTCTGCAGAAGATTACTGGTCAGACCATCCAGTTGCCTCCACCCATTAATATTCTAGCCGGCCCACCACCTCATCATGTGGTGCCACCTGCACCTGTCCCTACACCGCGGACACCACAACCGGCCGCTCCAGCTGCCCAACCTCCACCAGCACCTCCCCAATTCTTACAACAACAGCCCCGTCATCATCAACAACAACAAAAATACCACCAAGTTAATCCTAATCAGCAATCTGCGAATGAACCTACTTCTTTGCAAATAGTAATGTCTGCCCCAGAACAACAAATGATCTTACCATCTGAAGGAGGAGGCTTTGAGCCAACTCCGTCGAGATGGCCGAAACTGGAAGTTCTCGCACTCATAAAGATCAGAAGCGGGCTCGAATCGAGGTACCAGGAGGCCGGGCCCAAGGGCCCACTTTGGGAAGAACTCTCCGCTAGAATGCAACAGATGGGGTATAAGAGAAGCGCCAAAAGATGTAAGGAGAAATGGGAAAACATCAACAAGTACTTTAAGAAGGTCAAGGAAAGCAACAAGAAACGGCCTGAAGATGCAAAAACCTGCCCATATTTTCACGAACTCGATGCACTTTACCGGAAAAAGGTATTGGGAAGTTCTAGTACTACAGTAAGTAGCAGTACAAGTAGGCCAGAACAAGAGGAACAACGACGAGAAGTAGATCCACAACCACAAACTGCACTTGCTGCTGGATCAGGAACTGGAGGAGAAGCCAAGAAGAAGACATTATGA 2049 50.12 MQQGCGARSQSQSQPLIHPQSQHGETSAPDIVTKTSTSTDQPTRSQARAVDHSEQPQLVEVASPISSLPPAVGAVNLDELVPLSVAAGCLEADDDALAAVSGEVGGGSGSGGGGGGLTVGGNRWPRQETLALLKIRSEMDSVFREASVKGPLWEDVSRKLAEHGYSRSAKKCKEKFENVQKYYKRTKEGRAGRLDGKSYKFFSELEALYGTTGGNTSTHVAVSQPQVPPSSSLYQHANTTATTTSQAFPPPLSVGMGVSNPMPISSFRISPSSMSLAPAQLGTFGYHPSGMGPTVMTTHAAPAGGGVPFAGGISFSSNSPSSSFTGSDRDNDDDDLDHVEPSNTAGSSRKRKRVTSSKVHRMMEFFESLMKQVMQKQELMQQRFLDAIHKRENERMLREEAWKRQEITRLAQEHDLMAEERATSAARDAAIITFLQKITGQTIQLPPPINILAGPPPHHVVPPAPVPTPRTPQPAAPAAQPPPAPPQFLQQQPRHHQQQQKYHQVNPNQQSANEPTSLQIVMSAPEQQMILPSEGGGFEPTPSRWPKLEVLALIKIRSGLESRYQEAGPKGPLWEELSARMQQMGYKRSAKRCKEKWENINKYFKKVKESNKKRPEDAKTCPYFHELDALYRKKVLGSSSTTVSSSTSRPEQEEQRREVDPQPQTALAAGSGTGGEAKKKTL 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4259062 4263005 + Conep12aG0059600.1 Cone12ag0575 449419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0575 682 MobiDBLite consensus disorder prediction 637 682 - -
Cone12ag0575 682 MobiDBLite consensus disorder prediction 327 347 - -
Cone12ag0575 682 MobiDBLite consensus disorder prediction 312 357 - -
Cone12ag0575 682 Pfam Myb/SANT-like DNA-binding domain 544 630 IPR044822 -
Cone12ag0575 682 Pfam Myb/SANT-like DNA-binding domain 122 208 IPR044822 -
Cone12ag0575 682 MobiDBLite consensus disorder prediction 312 326 - -
Cone12ag0575 682 SMART sant 120 182 IPR001005 -
Cone12ag0575 682 SMART sant 541 603 IPR001005 -
Cone12ag0575 682 MobiDBLite consensus disorder prediction 454 489 - -
Cone12ag0575 682 CDD GT1 122 187 - -
Cone12ag0575 682 ProSiteProfiles Myb-like domain profile. 122 180 IPR001005 -
Cone12ag0575 682 FunFam Trihelix transcription factor GT-2 545 606 - -
Cone12ag0575 682 MobiDBLite consensus disorder prediction 1 52 - -
Cone12ag0575 682 ProSiteProfiles Myb-like domain profile. 543 601 IPR001005 -
Cone12ag0575 682 PANTHER FI21293P1 109 640 - -
Cone12ag0575 682 CDD GT1 543 608 - -
Cone12ag0575 682 MobiDBLite consensus disorder prediction 103 122 - -
Cone12ag0575 682 MobiDBLite consensus disorder prediction 490 512 - -
Cone12ag0575 682 FunFam Trihelix transcription factor GT-2 124 185 - -
Cone12ag0575 682 MobiDBLite consensus disorder prediction 454 512 - -
Cone12ag0575 682 MobiDBLite consensus disorder prediction 1 55 - -
Cone12ag0575 682 Gene3D - 545 606 - -
Cone12ag0575 682 Gene3D - 124 185 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0575 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0183 Cone-Chr10:892437 Cone12ag0575 Cone-Chr12:4259062 1.32E-39 dispersed
Cone12ag0575 Cone-Chr12:4259062 Cone4ag1502 Cone-Chr4:11686614 6.62E-97 dispersed
Cone12ag0575 Cone-Chr12:4259062 Cone8ag0572 Cone-Chr8:4557630 4.56e-312 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g296 . . . . . . . . . . Cma02g00969 Cma15g01346 Car02g00715 Car15g01214 . . Cpe05g00748 . . . . . . . . . . . . . . Cone8ag0572 Cone12ag0575 . . . Csa05g00132 Chy09g01362 . . . . . . . . . . Cmo02g00975 Cmo15g01408 Cma06g00453 . . . . . Bhi12g00049 . . Lac11g1813 . . . Cla01g00116 Cam01g0118 Cec01g0118 Cco01g0119 Clacu01g0115 Cmu01g0116 Cre09g2389 Lsi09g00104 . . Cme09g01908
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006703 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 5 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44460 PF07714 PK_Tyr_Ser-Thr 2.70E-46 CL0016 Cone TF