Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0579 ATGACCATCCCCGAGTCAGGTTTTATGATGGAGAACGGTGGTGCCAGGTGCTTTCCTCTGCCGCCCGATGAAGAGAATCGAATCATTTCCAAATTGATGAATAAATCGGAGTCTAGTTTGAAAGAAGGCAATTTGTACTACGTTATTTCCTATCGGTGGTATACAAGATGGCAGAGTTATGTTGGGCAACACACTGAAGAACATCCAGTAAAAGAGCTATCTTCTGGTTCTCAACAGATGGACATTGTTCCTTCAAAGGTGGTGGACAAACCTGGTCCAATTGATAACTCTGATATTATTGTAAAAGGAAAGGATTGCGAGAGCAACGAGATAGAGCTTCGTTGGTTGTTAGAGGAAGGACGAGACTATGTCTTAGTTCCTCAAGAAGTATGGGAATACCTTCTGGATTGGTATTCAGGGGGGCCTGTGCTGCCGAGAAAGCTGATCTCACAGGGTGTCAATCAAAAGAACTATTTTGTGGAGGTTTACCCGCTTAGTCTCAAGTTGATGGATTCCAGAGACAACAGTGAATCAATTATAAGGTTAAGCAAAAAGGCTACCATACAAGAACTCCACGAGAGTGTGATTGCTCTTAAAGGAATAGAGCATGGAAAGGCCTGCATATGGGACTACTTCAATAAGCAGAAACAATCGGTATTGGATATCTCAAGCCAAACCCTTGAGGAATTAAACTTGCAGATGGATCAAGATATTTTACTTGAAATACGGGACAAAGGATATTCTTCACGATCTAGCATGGATGCTACTGGAAATGAGTTGGCTTTGATTGCCCTAGAACCTTCAAGGTCTCCCTTGTCCATAGCAGGGGGACCAACCATGTCAAATGGCTATTCAACTGGTTATGGATATACTTTTAATCAGGGAAATTCCTCAAGTTCATCAGCAATTGATGATAAGAATGATGTTTATAATTCTGTCAAAAAGGGTGAAAAGGGAGGTTTGGCCGGGCTGCAGAATCTAGGAAATACGTGTTTCATGAATAGTGCCTTACAATGTTTAGTCCATACACCCTATCTTGTGGAGTATTTCTTGCAAGATTATTCTGAAGAGATCAATACAGAGAATCCTTTAGGAATGCATGGTGAGCTGGCACTAGCATTTGGTGAACTATTGAGGAAATTATGGTCCTCGGGACGAACTACTATCGCACCACGTGCATTCAAGGGAAAACTAGCACGTTTTGCCCCCCAGTTCAGTGGTTATAACCAGCATGATTCGCAAGAACTTCTTGCCTTCCTGTTGGATGGGTTGCATGAGGATTTGAATCGTGTCAAACAAAAGCCTTACTTTGAAACAAAGGATTCTGATGGCCGTCCAGATCAGGAAGTGGCAGATGAGTCATGGAGATACCACAAAGCTCGGAATGATTCATTGATTGTGGATGTTTGCCAGGGTCAATACAAGTCGACTTTGGTGTGCCCAGTCTGTAGCAAAATCTCAATTACCTTTGACCCCTTTATGTACTTGTCATTACCACTGCCTTCCACTGTCACTCGCACTATGACTGTTACCGTGTTCTATGCTGATGGCAGTAGGCTTCCAATGCCCTACACTGTCACAGTCTCGAGACATGGTTCCTGTAGAGATCTTAGCAGTGCATTGGGTACTGCATGTTGCCTGAAGAATGATGAGAGCCTTCTGGTTGCAGAGGTTTGTGACCATCAAATTTACCGATATTTTGAGAATCCTTCTGAACTATTGTCTTCAATAAAGGATGAAGAGCATGTGGTTGCTTATTGCCTTCCTAGAAAGGAGGCAGGAAGAGCAAAATTAGAGATTACTCACCGATGGCAGGAAAAATGTTCATTAGATCATTTGGAGAGTGGAGATAAAAAGCTTTTTGGAACTCCCCTTGTAACCTATTTGCAAGGAGATATGCAATGCGGAGCTGATATAGATTTAGCTGTCTCTAAAATTCTTTTCCCTTTGAGAAGAACGTATTCTTCGTCAACCGAGGCTCGTAATGGTAAGGAGCAAGTATATGTATCAGAATTGTTAGATCAACCATCGAACAGCTGCAAGCCTCAGTCTAGTACAAAGGACATGTTAGTTGGAAAGACAGATTCAGAGGAAACAGCAGACAGGGACTTATCATTTAATCTTCTTTTAACTGACCGAAGGAGTTTGAGCTGCAAGAGAATTGTAAAAGATTCTCACATTAACTCTTCTCGTCCTGTAAAAGTTTTCTTGGACTGGACTGATAAAGAACATGAATTATATGATGCTAGCTACCTCAAGGATATCCCTGTTGTTCACCCAACTAGGTCTACAAAGAAAACTCGGCAAGAAGCTAATTCCTTATTTTCATGCTTGGAGGCATTCTTGACTGAAGAACCTCTAGGTCCTGATGACATGTGGTACTGCTCTAGTTGCAAAGAACATAGACAAGCTACAAAGAAGTTGGACCTCTGGAAGTTACCAGAAGTAATTGTTTTTCACTTGAAAAGATTCTCATACAGCAGATACCTGAAAAACAAACTTGACACATTCGTTGATTTTTCTGTTCACAATCTTGATTTGAGCAAGTATGTTAAAAGCAAGGATGGAAAATCTCATGTCTATGAGCTATATGCCATAAGCAACCATTATGGCGGTCTAGGTGGTGGGCACTACACTGCATATGCCAAGTTATTAGATGAGAATAGATGGTATCATTTCGACGACAGTCATGTTTCCCCAGTTAGTGAAAGCGAGATAAAAACATCGGCTGCTTATTTGTTGTTCTACCAGAGAGTGGAAACCCAAGCAGATTCAGCAGTATGA 2784 41.63 MTIPESGFMMENGGARCFPLPPDEENRIISKLMNKSESSLKEGNLYYVISYRWYTRWQSYVGQHTEEHPVKELSSGSQQMDIVPSKVVDKPGPIDNSDIIVKGKDCESNEIELRWLLEEGRDYVLVPQEVWEYLLDWYSGGPVLPRKLISQGVNQKNYFVEVYPLSLKLMDSRDNSESIIRLSKKATIQELHESVIALKGIEHGKACIWDYFNKQKQSVLDISSQTLEELNLQMDQDILLEIRDKGYSSRSSMDATGNELALIALEPSRSPLSIAGGPTMSNGYSTGYGYTFNQGNSSSSSAIDDKNDVYNSVKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPYLVEYFLQDYSEEINTENPLGMHGELALAFGELLRKLWSSGRTTIAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYFETKDSDGRPDQEVADESWRYHKARNDSLIVDVCQGQYKSTLVCPVCSKISITFDPFMYLSLPLPSTVTRTMTVTVFYADGSRLPMPYTVTVSRHGSCRDLSSALGTACCLKNDESLLVAEVCDHQIYRYFENPSELLSSIKDEEHVVAYCLPRKEAGRAKLEITHRWQEKCSLDHLESGDKKLFGTPLVTYLQGDMQCGADIDLAVSKILFPLRRTYSSSTEARNGKEQVYVSELLDQPSNSCKPQSSTKDMLVGKTDSEETADRDLSFNLLLTDRRSLSCKRIVKDSHINSSRPVKVFLDWTDKEHELYDASYLKDIPVVHPTRSTKKTRQEANSLFSCLEAFLTEEPLGPDDMWYCSSCKEHRQATKKLDLWKLPEVIVFHLKRFSYSRYLKNKLDTFVDFSVHNLDLSKYVKSKDGKSHVYELYAISNHYGGLGGGHYTAYAKLLDENRWYHFDDSHVSPVSESEIKTSAAYLLFYQRVETQADSAV 927
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4373716 4386717 - Conep12aG0060000.1 Cone12ag0579 449423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0579 927 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 861 878 IPR018200 GO:0004843(InterPro)
Cone12ag0579 927 CDD Peptidase_C19R 765 917 - -
Cone12ag0579 927 SMART dusp 39 152 IPR006615 GO:0004843(InterPro)
Cone12ag0579 927 Pfam Ubiquitin carboxyl-terminal hydrolase 322 916 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Cone12ag0579 927 ProSiteProfiles DUSP domain profile. 20 149 IPR006615 GO:0004843(InterPro)
Cone12ag0579 927 Gene3D - 163 249 - -
Cone12ag0579 927 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 93 918 IPR050185 -
Cone12ag0579 927 Gene3D Cysteine proteinases 305 520 - -
Cone12ag0579 927 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 322 919 IPR028889 -
Cone12ag0579 927 SUPERFAMILY DUSP-like 17 149 IPR035927 -
Cone12ag0579 927 SUPERFAMILY Cysteine proteinases 320 919 IPR038765 -
Cone12ag0579 927 Pfam DUSP domain 44 149 IPR006615 GO:0004843(InterPro)
Cone12ag0579 927 Gene3D - 8 162 IPR035927 -
Cone12ag0579 927 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 323 338 IPR018200 GO:0004843(InterPro)
Cone12ag0579 927 Gene3D Cysteine proteinases 650 926 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0579 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0060 Cone-Chr12:352397 Cone12ag0579 Cone-Chr12:4373716 7.46E-07 dispersed
Cone12ag0579 Cone-Chr12:4373716 Cone13ag0641 Cone-Chr13:6445381 1.29E-287 dispersed
Cone7ag0396 Cone-Chr7:1767262 Cone12ag0579 Cone-Chr12:4373716 1.50E-21 transposed
Cone12ag0579 Cone-Chr12:4373716 Cone8ag0587 Cone-Chr8:4919698 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g256 . . . Bda08g00752 Bpe05g00387 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0587 Cone12ag0579 . . . . . . . . . . . . Bma05g00538 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005583 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40