Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0580 ATGGCCGTTGTTGAGAATGGTGGTGGTCTGGCCGTGGCTTCAAACTTCGACTCTTTGTCGCAGGATTCTGGTGCATTCGGCAATCAAGATCTGCCGAACGAACCTAGCTTCCATGAGAACAACAATGGCGATGCCCACGTTCTCAAGTCGCATGACGATCAGAGCCGTTTCCTCAAGGTTACACCATCGGCTTCGCATAGCTTCGATCGTACGGCGGAGAAGATCGGGAATACTCAAAATCTGCCTTTGATGCAACGATCCAACGGTGAGGATTTGCAGAAGGAGAGGGATGAGATGGAGGAGAGCTTCAATCATGATATGAGGGAGTTGCGAGAGCTTATCTCCAAGTTGAACCCCTGGGCTAAGGAGTTTGTTCCTTCTTCTCTTGTGAATAACAGTGGAATCAATGGATGGTTTTATGGTAGCAACGCGCTTGTGCACAACAACAGAAATGGTTTTCTTAATGGAAACAATGGTAGACGGAGGAAGAACTATAATCCAGAGAAAAGGAGAATGAACAACAGGACCAGTGAGGCTCAACGAGAAGACATCATTCGAAGAACTGTGTATGTCTCTGACATTGATTATCAGGTGACGGAAGAACAACTCGCAGCTTTATTTATCAATTGCGGGCAGGTTGTTGACTGCCGTATTTGTGGCGACCCCAATTCTGTCCTTCGTTTTGCTTTTATCGAGTTCACTGATGAAGAAGGTGCACATGCTGCTTTGAATCTTGGGGGAACAATGCTTGGATTCTACCCTGTGAGAGTGCTGCCATCTAAGACAGCTATTGCACCAGTTAACCAGACATTTTTGCCTAGGACTGAAGATGAACGAGAGATGTGTGCAAGAACTATCTATTGTACAAATATTGACAAGAAGGTTACCCAAGCTGATGTAAAACTCTTTTTTGAATCGGTCTGTGGAGAGGTCTATCGCTTGAGGCTTCTTGGGGACTATAACCATTCTACACGTATTGCCTTCGTTGAGTTCATAATGGCTGAAAGTGCAATTGCTGCTCTCAACTGTAGTGGTGTGGTTCTGGGCTCTCTGCCAATAAGGGTGAGCCCGTCGAAGACACCTGTCCGTCCCCGTGTTCCTCGTCTTGCAATACAATAA 1119 46.29 MAVVENGGGLAVASNFDSLSQDSGAFGNQDLPNEPSFHENNNGDAHVLKSHDDQSRFLKVTPSASHSFDRTAEKIGNTQNLPLMQRSNGEDLQKERDEMEESFNHDMRELRELISKLNPWAKEFVPSSLVNNSGINGWFYGSNALVHNNRNGFLNGNNGRRRKNYNPEKRRMNNRTSEAQREDIIRRTVYVSDIDYQVTEEQLAALFINCGQVVDCRICGDPNSVLRFAFIEFTDEEGAHAALNLGGTMLGFYPVRVLPSKTAIAPVNQTFLPRTEDEREMCARTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYNHSTRIAFVEFIMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRVPRLAIQ 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4405542 4410396 + Conep12aG0060100.1 Cone12ag0580 449424

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0580 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 360 IPR000504 GO:0003723(InterPro)
Cone12ag0580 372 CDD RRM1_CID8_like 185 264 IPR034823 -
Cone12ag0580 372 CDD RRM2_CID8_like 280 361 IPR034825 -
Cone12ag0580 372 FunFam Polyadenylate-binding protein-interacting protein 10 278 356 - -
Cone12ag0580 372 Pfam RNA recognition motif 286 353 IPR000504 GO:0003723(InterPro)
Cone12ag0580 372 Pfam RNA recognition motif 189 251 IPR000504 GO:0003723(InterPro)
Cone12ag0580 372 SUPERFAMILY RNA-binding domain, RBD 172 264 IPR035979 GO:0003676(InterPro)
Cone12ag0580 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 262 IPR000504 GO:0003723(InterPro)
Cone12ag0580 372 SMART rrm1_1 188 258 IPR000504 GO:0003723(InterPro)
Cone12ag0580 372 SMART rrm1_1 285 356 IPR000504 GO:0003723(InterPro)
Cone12ag0580 372 MobiDBLite consensus disorder prediction 23 40 - -
Cone12ag0580 372 MobiDBLite consensus disorder prediction 23 48 - -
Cone12ag0580 372 MobiDBLite consensus disorder prediction 153 178 - -
Cone12ag0580 372 SUPERFAMILY RNA-binding domain, RBD 278 365 IPR035979 GO:0003676(InterPro)
Cone12ag0580 372 Gene3D - 268 365 IPR012677 -
Cone12ag0580 372 Gene3D - 147 265 IPR012677 -
Cone12ag0580 372 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 158 365 - -
Cone12ag0580 372 FunFam Polyadenylate-binding protein-interacting protein 11 153 264 - -
Cone12ag0580 372 Pfam Ataxin-2 C-terminal region 114 128 IPR009818 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0580 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0580 Cone-Chr12:4405542 Cone1ag1017 Cone-Chr1:55099894 5.32E-136 dispersed
Cone12ag0580 Cone-Chr12:4405542 Cone8ag0590 Cone-Chr8:4950653 2.34E-243 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g255 . . . . . . . Bma14g00703 . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0590 Cone12ag0580 . . . . . . . . Bda07g00483 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004204 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43