Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0581 ATGGAGAACACACACGCAGAACCAGTCAATGGCTTTTCCGCGGCGATGGATGCAGCCACCAAAGTTATAACTTGCAAGGCTGCTGTTGCTCGGAGTCCTGGACAGCCTTTTTCCATTGAAGAAATTCGAGTGGATCCCCCTCAGAAATCTGAAGTGCGAGTCAAAATCCTTTTCACTTCCGTCTGTCACACCGACCTTAGTGCATGGCAAGGCGAGAATGAATCTCAGCGAGCTTACCCTCGAATTATGGGGCACGAAGCTTCCGGGATTGTGGAGAGCGTGGGAGATGGGGTGACAGACATGAAACCAGGAGATTACGTGGTGCCAATTTTTAACGGAGAGTGCGGTGAATGTGTTTATTGCAAATGTGATAAGACGAACATGTGCGAAAAGCTTGGAGTGAATCCAATGAAGACTGTGATGGTCAACGATGGGAAGACTCGATTTTCAACGATGGATGGGAAGCCAATTTACCATTTCCTCAACACATCCACTTTTAGCGAGTACACGGTGCTCGAGACTGGCTGTGTCGTGAAGATTGACCCTCAAGCTCCCATTAAGAAGATGACTTTGCTGAGTTGCGGTGTTTCTACAGGAGTTGGAGCTGCGTGGAACACTGCAAACGTGCAAGCTGGATCAAGTGTGGCTATTTTTGGTTTAGGAGCTGTTGGACTTGCTGTGGCGGAAGGAGCAAGAACTAGGGGGGCATCTAAAATTATTGGCGTTGATATCAACCCTATCAAATTCATTAAAGGCAAAGCGATGGGAATAACGGACTTCGTAAATCCAACTGACACTGACAAACCTGTGAGTGAGGTTAGTACTAAATCCAATTAA 837 47.07 MENTHAEPVNGFSAAMDAATKVITCKAAVARSPGQPFSIEEIRVDPPQKSEVRVKILFTSVCHTDLSAWQGENESQRAYPRIMGHEASGIVESVGDGVTDMKPGDYVVPIFNGECGECVYCKCDKTNMCEKLGVNPMKTVMVNDGKTRFSTMDGKPIYHFLNTSTFSEYTVLETGCVVKIDPQAPIKKMTLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARTRGASKIIGVDINPIKFIKGKAMGITDFVNPTDTDKPVSEVSTKSN 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4492977 4501138 - Conep12aG0060200.1 Cone12ag0581 449425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0581 278 FunFam S-(hydroxymethyl)glutathione dehydrogenase 199 278 - -
Cone12ag0581 278 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 186 273 IPR036291 -
Cone12ag0581 278 Gene3D - 206 277 - -
Cone12ag0581 278 Gene3D - 20 205 - -
Cone12ag0581 278 FunFam alcohol dehydrogenase 1-like isoform X1 33 198 - -
Cone12ag0581 278 Pfam Alcohol dehydrogenase GroES-like domain 49 180 IPR013154 -
Cone12ag0581 278 SUPERFAMILY GroES-like 19 206 IPR011032 -
Cone12ag0581 278 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 84 98 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Cone12ag0581 278 PANTHER ALCOHOL DEHYDROGENASE 21 273 - GO:0004024(PANTHER)|GO:0005829(PANTHER)|GO:0008270(PANTHER)|GO:0046294(PANTHER)|GO:0051903(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0581 K00001 - - vvi:100256495 420.624
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0581 Cone-Chr12:4492977 Cone13ag0349 Cone-Chr13:3137956 6.81E-104 dispersed
Cone12ag0581 Cone-Chr12:4492977 Cone17ag0800 Cone-Chr17:6280691 2.09E-105 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g254 . . . . Bpe05g00386 . Bma07g01033 . . . Cma02g00945 Cma15g01322 Car02g00694 Car15g01187 . . Cpe05g00768 . . . . . . . . . . . . . . . Cone12ag0581 . . . Csa05g00159 Chy09g01339 . . . . Bda09g00635 Bpe08g00906 . Bma05g00537 . . Cmo02g00954 Cmo15g01385 . . . . . . Bhi12g00080 . . Lac11g1903 Hepe06g1432 . Lcy12g1511 Cla01g00141 Cam01g0146 Cec01g0142 Cco01g0147 Clacu01g0141 Cmu01g0141 Cre09g2365 Lsi09g00132 . . Cme09g01886
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008094 1 1 1 2 2 1 2 0 0 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 34