Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0582 ATGGCAGTGAGATCATACAAAGAAGCTCTAAGGAATGCATACATGTATGGGAGGAAAGCAGGATTAGCAAAGGGTTTGGGACTGGGATCAATGCACTGTGTTCTTTTCTTGTCATGGGCACTGCTTGTTTGGTTCACTAGCATTGTCGTTCACAAGGATATTTCCAACGGCGGCGAGTCCTTCATCACCATGTTAAATGTTGTCATTGCTGGCCTGTCACTTGGGCAGGCTGCCCCAGATATTACGGCATTTGTGAGAGCAAAGACAGCAGCTTACCCAATATTTGAGATGATAGAGAGGAACACGATGACCAAAACCAACTCGAAAGCTAATGGCCGAACACTAGAAAAGCTTGAAGGAAAAATTCATTACCCATCTCGTCCGGATGTTCTTATTTTCAACAAGTTCGGTCTTGATATTCTGGCGGGAAAGATTTTAGCCCTCGTTGGAGGAAGTGGGTCCGGGAAAAGCACTGTTATATCGTTGATTGAACGGTTCTACGAACCTCTTTCCGGACAAATACTATTAGATGGTCATAATGTGAGAGAACTTGACCTCAAGTGGCTTAGGCAGCAAATTGGACTAGTTAATCAAGAACCGGCTCTTTTCGCAACGACCGTCAGAGAGAATATTTTATACGGAAAAGATGATGCTACCCTCGACGAGATCACACGTGCAGCAAAACTTTCGGAGTCTCTCTCTTTCATTAACAACCTCCCTGACGGATTTGAAACTCAGGTCGGTGAGAGAGGTGTACAACACTCGGGTGGACAAAAGCAAAGAATTGCAATAGCCCGAGCAATTGTGAAAAATCCGTCGATCCTATTGCTGGATGAAGCAACAAGTGCATTGGATGCAGAATCCGAGAAGAGTGTTCAAGATTCACTGGATCGGGCAATGGTGGGCCGAACAACCATCGTGGTGGCCCACAGTCTATCTACCATAAGGAATGCTGATATGATTTCTGTTGTTCAGGAGGGTAAGATAGTAGAAACTGGAAGCCATGAGGAGCTCATTTCAAAGCCGAACAGTGCTTATGCTTCTCTTGCTCAGCTCCAAGAGGCAGTATCTTTGCAGCGGTACCCTTCTGTCAGGTCTAATTTGGGCCGGCCCCCAAGCATAAAGTATTCTCGGGAATTGTCTCGCACTAGAACAAGCTTTGGTGCTAGTTTCAACTCAGAAAAGGAATCTGCTGGAGGTATTGGTGTGGATGAATTGAAAGCGGGAAAGCCAAGGCGTGTTTCAAGTAGAAGGCTCTATTCTATGGTGAGGCCGGACTGGGTTTATGGAGTTGTAGGCACTGTATGTGCATTTATTGCAGGGTCCCAAATGCCTCAATTCGCTCTTGGGGTCTCTCAAGCTCTTGTTTCTTTCTATATGGAATGGGACCAAACCCGCCGTGAGATCAGAAAAATCGCTTTTCTGCTCTGTGGAGCATCAGTTATAACTGTCATAGTTCATGCCATTGAACATATCTGTTTTGGAATTATGGGAGAGAGGCTCACTCTCCGTGTTCGAGAAAAAATGTTTTCTGCCATATTGAGGAATGAGATAGGGTGGTTTGACAACTTAGAAAATACAAGTGGAATCCTTTATTCCCGATTAGAGAGTGATGCAACTCTGTTAAGATCACTAGTTGTGGATCGGTCTACCATTCTCTTACAAAATGTTGGTCTGGTTGTTGCCTCATTTATCATTGCCTTCATCTTGAATTGGAGGCTCACACTTGTTGTCTTGGCGACTTATCCATTGATCGTCAGTGGTCACATAAGCGAGAAACTTTTCATGAAAGGCTATGGAGGTAACTTGAGCAAAGCATATCTTAAGGCTAATATGCTGGCTGGAGAGGCTGTTAGTAACATCCGAACTGTTGCTGCATTTTGCTCAGAAGAGAAGGCGCTTGATCTTTACTCACAGGAGCTTGTAGGACCTTCTAGGCGGTCGCTTGTTCGTGGTCAGATTGCTGGCATATTTTATGGTGTCTCTCAATTCTTCATCTTCTCATCCTATGGCTTGGCCTTATGGTATGGTTCGGTTTTGATGGGAAAAGAGCTAGCTAGCTTTAAATCTGTGATGAAGTCATTTATGGTTCTAATAGTAACTGCCTTAGCCATGGGTGAGACTTTAGCTCTAGCCCCCGACCTATTGAAGGGAAACCAAATGGTAGCATCGGTCTTTGAGGTTATGGACCGCCAGACAGAGGTATCAGGAGATGTAGGTGAAGAGCTAACCACAGTTGAAGGTTTTATCGAGTTAAGGGGGGTTGAATTTAGATATCCCTCCAGACCAGACGTAGTGATTTGCAGAGATTTCAATCTTAAAGTTCGAGCGGGGAAGAGCATGGCATTAGTTGGACAAATCCAACAAGAACCGGCACTTTTCGGCACATCAATTTACGAAAACATTATTTATGGAAAGCAAGGAGCCTCTGAAGGAGAAGTGATGGAAGCAGCCAAGCTTGCTAATGCTAACAGTTTTATTAGTGCCTTACCTGAGGGTTACTCGACCAAAGTAGGCGAAAGAGGAGTGCAACTTTCCGGTGGACAGAGACAAAGGGTAGCCATTGCGCGAGCCGTCTTAAAGAACCCAGAAATCTTATTGCTAGATGAAGCCACAAGTGCTCTTGATGTTGAATCCGAGAGAGTAGTACAACAAGCTCTTGACCGGTTAATGAAAAACCGGACAACAATAATGATAGCTCATAGGCTATCTATCTACAATAAAAAATGCTGA 2733 44.49 MAVRSYKEALRNAYMYGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIVVHKDISNGGESFITMLNVVIAGLSLGQAAPDITAFVRAKTAAYPIFEMIERNTMTKTNSKANGRTLEKLEGKIHYPSRPDVLIFNKFGLDILAGKILALVGGSGSGKSTVISLIERFYEPLSGQILLDGHNVRELDLKWLRQQIGLVNQEPALFATTVRENILYGKDDATLDEITRAAKLSESLSFINNLPDGFETQVGERGVQHSGGQKQRIAIARAIVKNPSILLLDEATSALDAESEKSVQDSLDRAMVGRTTIVVAHSLSTIRNADMISVVQEGKIVETGSHEELISKPNSAYASLAQLQEAVSLQRYPSVRSNLGRPPSIKYSRELSRTRTSFGASFNSEKESAGGIGVDELKAGKPRRVSSRRLYSMVRPDWVYGVVGTVCAFIAGSQMPQFALGVSQALVSFYMEWDQTRREIRKIAFLLCGASVITVIVHAIEHICFGIMGERLTLRVREKMFSAILRNEIGWFDNLENTSGILYSRLESDATLLRSLVVDRSTILLQNVGLVVASFIIAFILNWRLTLVVLATYPLIVSGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKALDLYSQELVGPSRRSLVRGQIAGIFYGVSQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRQTEVSGDVGEELTTVEGFIELRGVEFRYPSRPDVVICRDFNLKVRAGKSMALVGQIQQEPALFGTSIYENIIYGKQGASEGEVMEAAKLANANSFISALPEGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMKNRTTIMIAHRLSIYNKKC 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4535622 4539287 + Conep12aG0060300.1 Cone12ag0582 449426

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0582 910 SMART AAA_5 769 909 IPR003593 GO:0016887(InterPro)
Cone12ag0582 910 SMART AAA_5 142 334 IPR003593 GO:0016887(InterPro)
Cone12ag0582 910 Pfam ABC transporter 134 282 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone12ag0582 910 SUPERFAMILY ABC transporter transmembrane region 417 731 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone12ag0582 910 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 686 907 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone12ag0582 910 Gene3D - 787 907 IPR027417 -
Cone12ag0582 910 ProSitePatterns ABC transporters family signature. 845 859 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone12ag0582 910 Gene3D ABC transporter type 1, transmembrane domain 3 720 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone12ag0582 910 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 3 353 IPR039421 GO:0015421(PANTHER)
Cone12ag0582 910 FunFam ABC transporter B family member 19 105 354 - -
Cone12ag0582 910 CDD ABC_6TM_Pgp_ABCB1_D2_like 420 735 - -
Cone12ag0582 910 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 743 905 IPR027417 -
Cone12ag0582 910 FunFam ABC transporter B family member 1 410 718 - -
Cone12ag0582 910 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 353 IPR027417 -
Cone12ag0582 910 SUPERFAMILY ABC transporter transmembrane region 3 99 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone12ag0582 910 Gene3D - 120 379 IPR027417 -
Cone12ag0582 910 Pfam ABC transporter transmembrane region 432 702 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone12ag0582 910 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 116 351 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone12ag0582 910 CDD ABC_MTABC3_MDL1_MDL2 123 353 - -
Cone12ag0582 910 Gene3D - 741 786 IPR027417 -
Cone12ag0582 910 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 431 717 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone12ag0582 910 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 86 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone12ag0582 910 Pfam ABC transporter 784 873 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0582 K05658 - - csv:101219304 1429.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0582 Cone-Chr12:4535622 Cone7ag1900 Cone-Chr7:12180404 4.51E-285 dispersed
Cone12ag0582 Cone-Chr12:4535622 Cone8ag0595 Cone-Chr8:5053599 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g694 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0595 Cone12ag0582 . . . . . . . . . . . . . . . . . . . . . . . Bhi05g00466 . . Lac11g2437 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009637 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 2 2 1 33