Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0587 ATGGAGAGAGGAGCAACAGCTCTGTCAGCGATGGAGGCCTTTGAAAAGCTAGAGAAAGTTGGAGAAGGAACGTACGGGAAGGTGTACAGAGCAAAAGAGAAGGCGACTGGGAAGATCGTCGCCCTCAAGAAGACTCGCCTCCACGAGGATCAGGAAGGTGTCCCTCCAACCACTCTTCGTGAGATCTCCATTCTCCGTATGCTTTCCAAAGATCCTCACATTGTCAAGTTGATGGATGTCAAGCAAGGTCAGAACAAAGAAGGAAATACCGTGCTGTATTTGGTGTTTGAGTACATGGACACGGATCTTAAGAAATACATCAGGAGTTTTCGTCAATCCGGTGAAAACATTCCCGTTGACACTGTCAAGAGTCTGATGTTCCAACTCTGCAAAGGGGTTGCTTTTTGCCATGGCCACGGGATCTTACACAGAGATCTGAAGCCTCACAATCTGCTGATGGACTGGAAGACAATGATTCTAAAGATTGCAGATCTTGGGCTGGCTCGAGCGTTTACTGTGCCCATTAAGAAGTATACACATGAGATATTGACCCTCTGGTATAGAGCTCCTGAAGTTCTCCTGGGCTCTACGCATTACTCAACTCCAGTGGATATGTGGTCTGTTGGCTGCATTTTTGCTGAACTAGTCACCAAGCAAGCACTCTTCCAAGGGGATTCCGAGCTGCAACAGCTTCTGGATGTATTTAGGTTATTAGGAACTCCAAATGAAGAAATGTGGCCTGGAGTTAGCAAATTGATGAACTGGCATGAGTACCCTCAGTGGAGACCACAGAGTCTATCTACTGCCGTTCCTAACCTCGACGAAGAGGGCCTTAATCTCTTGTCGCAGATGTTGCAGTACGAGCCTTCCAAGAGGATTTCAGCAAAGAAAGCTATGGAACATCCTTACTTCGATCTTGTGAACAAGGCCTGTGCCTGA 939 47.18 MERGATALSAMEAFEKLEKVGEGTYGKVYRAKEKATGKIVALKKTRLHEDQEGVPPTTLREISILRMLSKDPHIVKLMDVKQGQNKEGNTVLYLVFEYMDTDLKKYIRSFRQSGENIPVDTVKSLMFQLCKGVAFCHGHGILHRDLKPHNLLMDWKTMILKIADLGLARAFTVPIKKYTHEILTLWYRAPEVLLGSTHYSTPVDMWSVGCIFAELVTKQALFQGDSELQQLLDVFRLLGTPNEEMWPGVSKLMNWHEYPQWRPQSLSTAVPNLDEEGLNLLSQMLQYEPSKRISAKKAMEHPYFDLVNKACA 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5045694 5048045 + Conep12aG0060800.1 Cone12ag0587 449431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0587 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag0587 312 FunFam Cyclin-dependent kinase 2 102 311 - -
Cone12ag0587 312 SUPERFAMILY Protein kinase-like (PK-like) 9 305 IPR011009 -
Cone12ag0587 312 Gene3D Transferase(Phosphotransferase) domain 1 101 311 - -
Cone12ag0587 312 SMART serkin_6 14 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0587 312 Pfam Protein kinase domain 14 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0587 312 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524(InterPro)
Cone12ag0587 312 ProSiteProfiles Protein kinase domain profile. 14 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0587 312 Gene3D Phosphorylase Kinase; domain 1 9 100 - -
Cone12ag0587 312 PANTHER CELL DIVISION PROTEIN KINASE 14 304 IPR050108 GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)
Cone12ag0587 312 FunFam Cyclin-dependent kinase B2,2 10 100 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0587 Cone-Chr12:5045694 Cone7ag1950 Cone-Chr7:12440276 2.17E-211 dispersed
Cone9ag1370 Cone-Chr9:10250002 Cone12ag0587 Cone-Chr12:5045694 1.37E-39 dispersed
Cone12ag0587 Cone-Chr12:5045694 Cone8ag0599 Cone-Chr8:5164999 6.57E-220 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81955 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0587 K07760 - rcu:8273672 566.614