Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0591 ATGGGCCTAACTCTTACTCCATCCGCTAATGTAAAAACACCTAAACCTATTTTACAAATCATCTCCTATCTCCAGCCACGCCACGCCACACCACACCACACCACACCATCGCCTCCAGCGAGATCCGCCACCTCCAAACTCTGCCTACTATTGTCCATGGCAAAATCCTTCTTTGGTTCAGCACCTCCCCCCCTTCCCTTCAGATCCTTCATTTCACCTATCAAAAAGTACTCTCGGCTCGCCGTCTCCGCTCAGATTATCAGTACCTCCACCGGTACTCAAACAATGCCGCCGGAACAGCAGGATGAGAAGGAACACAAGCAGCCGCATCCCTCGCTGGAGGTTATTGGTGGAGCTCGCGATCGATTTCTTCCGGCTTTCAAGACACTGGACCGTCCCTACGTTCCGTTCCCTTTCATCGGTTGGAATTGCCATGTCGAGACCATATTCGCCGCCTTTTACAGATCCGTGCCTGATGTCAGGTACCGCCGTGAGTGCATTCTGATGAAGGATGGAGGTGCTGTGTCTCTCGATTGGGCCACCGGAGACCAGCGTCGCTTGCCTCCCGACGCTCCTATTCTCATTCTACTGCCTGGGCTAAGTGGAGGGAGTCAGGATGGATATGTGAAGCACATGTTGGTTAGAGCTAGAAGTGATGGGTGGCGGGTTGTGGTATTCAACAGTCGAGGTGGAGGAAATAGCCCAGTTACAACCCCTCAGTTCTATTCAGCTTCATTTTTAGGAGATCTACGTGAAGTAGTGGCACATGTCAGTAGTTGCTACCAGGAAGCTAATGTATATGCTGTTGGCTGGTCTCTTGGTGGAAACATTCTGGTTAATTATTTGGGTCGGGAACCTTATCCATCTCCTCTTTCTGGTGCTGTATCATTGTGTAATCCTTTCAATTTGGTAATGGCGGATGAGAATTTACACAAGGGTATTAACATTATTTATAATAGATCTCTTGCAACAAGCCTCAGCAGAATTTATAAGAGACATGCCCCACTCTTTGAGGATATTGATGGCGAATTCAATATTGCCTTGGCTGCTAATGCTAAAACTGTCAGGGAGTTTGATGATGCAATAACACGTGTTTCTTTTGGTTTCAATTCTGTGGATGACTACTACTCGAATTCGAGCAGTGCAGATGTCATAAAAACTGTTAGGATACCATTGCTTTGCATCCAGGCTGCAAATGATCCCATTGCTCCGGAAAGAGGTATTCCTCGTGAAGATATCAAGGAAAATCCAAACTGCTTGTTGATAGTGACACCCCAAGGCGGTCATCTGGGATGGGTTGCGAGTCCTGAAGCTCCATTCGGAGCTCCTTGGACTGATCCTTCCGTGATGGATTTCCTTCAGTATCTCGAAAATAATCGATCATCCAAAGATTGGTCATCTTCTATTGATCCGTAG 1416 47.46 MGLTLTPSANVKTPKPILQIISYLQPRHATPHHTTPSPPARSATSKLCLLLSMAKSFFGSAPPPLPFRSFISPIKKYSRLAVSAQIISTSTGTQTMPPEQQDEKEHKQPHPSLEVIGGARDRFLPAFKTLDRPYVPFPFIGWNCHVETIFAAFYRSVPDVRYRRECILMKDGGAVSLDWATGDQRRLPPDAPILILLPGLSGGSQDGYVKHMLVRARSDGWRVVVFNSRGGGNSPVTTPQFYSASFLGDLREVVAHVSSCYQEANVYAVGWSLGGNILVNYLGREPYPSPLSGAVSLCNPFNLVMADENLHKGINIIYNRSLATSLSRIYKRHAPLFEDIDGEFNIALAANAKTVREFDDAITRVSFGFNSVDDYYSNSSSADVIKTVRIPLLCIQAANDPIAPERGIPREDIKENPNCLLIVTPQGGHLGWVASPEAPFGAPWTDPSVMDFLQYLENNRSSKDWSSSIDP 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5138724 5144714 - Conep12aG0061200.1 Cone12ag0591 449435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0591 471 Gene3D alpha/beta hydrolase 167 453 IPR029058 -
Cone12ag0591 471 Pfam alpha/beta hydrolase fold 192 430 IPR000073 -
Cone12ag0591 471 PANTHER ABHYDROLASE DOMAIN-CONTAINING PROTEIN 82 463 IPR050960 GO:0034338(PANTHER)|GO:0044255(PANTHER)|GO:0047372(PANTHER)
Cone12ag0591 471 FunFam Esterase/lipase/thioesterase family protein 168 440 - -
Cone12ag0591 471 ProSitePatterns Uncharacterized protein family UPF0017 signature. 359 400 IPR000952 -
Cone12ag0591 471 SUPERFAMILY alpha/beta-Hydrolases 154 439 IPR029058 -
Cone12ag0591 471 MobiDBLite consensus disorder prediction 90 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0591 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0591 Cone-Chr12:5138724 Cone17ag0750 Cone-Chr17:5587275 4.73E-53 dispersed
Cone7ag0001 Cone-Chr7:1196 Cone12ag0591 Cone-Chr12:5138724 7.19E-39 transposed
Cone12ag0591 Cone-Chr12:5138724 Cone8ag0597 Cone-Chr8:5087967 5.77E-179 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g237 . . . . . . . . . . Cma02g00942 . Car02g00690 . . . Cpe05g00772 . . . . . . . . . . . . . . Cone8ag0597 Cone12ag0591 . . . Csa05g00167 Chy09g01331 . . . . Bda09g00645 Bpe08g00896 . . . . . . . . . . . . Bhi12g00089 . . Lac11g1928 Hepe06g1439 . Lcy12g1523 Cla01g00148 Cam01g0153 Cec01g0149 Cco01g0155 Clacu01g0148 Cmu01g0148 Cre09g2358 Lsi09g00139 . . Cme09g01879
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010186 1 1 0 0 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 32