Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0592 ATGGTAACCGAGGAGCTTTTAGAGGAGCTTCTGAACGTAGACATTCAAATTCAGGAAGCGGAAGCTCAAGTAAGAACGTTGATTGCACAGCAGGAGACTTTGTACCAGAGAAAATCTGAATTGGAAGCCTTGTTGGAAGAGTGCAAAGGATCTGAGAATCCGGTCGACCATGGCACTTCTACCACTTCGGAAAATTGGGCTGGCCAATTTGAGTGGGATTTTGAAGCTGACGATGTTAGGTTTAATGTATTTGGAATATCCAAATATCGTGCAAATCAGCGAGAAATCATTAATGCTGTCTTGAGTGGAAGGGATGTTCTGGTGATTATGGCTGCAGGGGGTGGCAAGAGTCTCTGTTATCAGTTACCAGCTTTTTTATGCAACGGAGTTTCTCTTGTAGTCAGTCCTTTACTTTCTTTGATTCAGGACCAGGTGATGTGCTTGACTGCTTTAGGCATTTCAGCATACGTGTTGGCATCAACTACTAGTAAAGATGGAGAGAAGTTCATATTCAAGGCTCTTGAGAAGGGTGAAGGGAATATCAAGATACTTTATGTCACTCCAGAAAAGATATCAAAGAGCAAGAGGTTTATGTCAAAACTTGAAAAGTGCTATCATGCTGGCCGTCTTTCTCTAATTGCAATTGATGAGGCGCACTGTTGTAGTCAGTGGGGTCATGACTTTCGCCCTGACTACAAGAATCTTGGTATTCTAAAGACTCAGTTTCCAAATGTACCCATGGTTGCTTTGACTGCAACTGCTACTCAAAGAGTCCAAAATGATCTGATGGAGATGCTCCACATTCGCAAATGTGTTAAATTTGTTAGCACAGTCAACAGGCCAAATATTTTTTATATGGTACGGGAAAAGTCATCAATTGGTAAGGTGGCAATTGATGAAATTTCCGAATTTATTCAAGAATCTTATCCAAATAAAGAATCTGGGATAGTTTATTGCTTCACTAGAAAGGAATGTGAACAAGTTGCAAAGGAGCTACGAGAGAGAGGCATTTCTGCTGACTATTATCATGCAGACATGGACTCCAATGCTCGCGAGAAAACTCATATGAGATGGAGCAATAACAAGCTACAAATTATTGTTGGTACTGTAGCTTTTGGTATGGGAATCAACAAACCAGATGTTAGGTTTGTTATCCATCACAGCCTGAGCAAATCAATGGAAACGTACTATCAGGAAAGTGGTCGAGCTGGACGAGATGGACTCCCTTCTGAATGCTTACTTTACTTTAGGCCTGGTGATGTTCCTAAGCAAAGTTCAATGGTGTTCTATGAAAATTCTGGACTGCAGAATCTCTATGATATAGTTAGATACTGCCAGTCTAAAAAAGAGTGCCGTCGTGCTGCTTTTTCCCGGCATTTCGCTGAGCCTTTACAAGATTGCAATGGGATGTGCGACAATTGTGCTTCCTCAAATGAGATTAAGGAAGTGGACGTTTGCTGTCATGCCAAACTTATGTTTTCATTGTTACAAAATGCTCAAGAGAAAAATCAGAGAATGACAATGTTGCAGATGGTCGACAAAATGAAAACAGAGCAGAAGAAACTAGGTTCTAACCTAAGGAGAGACGAAATAGAACAACTTGTTGTGAAACTTATACTAGATCGTGTTTTGAAAGAAGAATTTCAACATACAGCTTATGCCACAAATGCTTATGTTACAGTTGGACCATTAGCCAAGCAAGTATTGCAAGGGAAGAAAATGGTGAAGCTAGAGATATGTAGTGAACAAAAAGGTAATGCTATGAAATCAATGAAAAAAGGCCCTGCATCATCCCGTTTGGAGGTTAACCTTGATGAGCTAAGGAAGGAGCTAGCTTTAGTTGATGGAGGAATTTTTCCTCATTCTATTCTCTCAACCCAGCAAATCCACATGATAAGTTCTCAAAAACCAGATTCCTTGGAACAGTTGGAGAAGATAATTGGAAAGTTGAAAACAGACAAGTATGGAAATAAAATTCTCGAGCAAGTTGAAAATCACTCTGCTATTGATCAGGTGGATGAATCAAAGGAAGTGAAACAGGGTAAAACAAGTTCAGCAAAAAGACCAAACCCGAACAAGTCTGGTGAGAACAGAGCAGCAAAGAAGTGA 2109 40.26 MVTEELLEELLNVDIQIQEAEAQVRTLIAQQETLYQRKSELEALLEECKGSENPVDHGTSTTSENWAGQFEWDFEADDVRFNVFGISKYRANQREIINAVLSGRDVLVIMAAGGGKSLCYQLPAFLCNGVSLVVSPLLSLIQDQVMCLTALGISAYVLASTTSKDGEKFIFKALEKGEGNIKILYVTPEKISKSKRFMSKLEKCYHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPMVALTATATQRVQNDLMEMLHIRKCVKFVSTVNRPNIFYMVREKSSIGKVAIDEISEFIQESYPNKESGIVYCFTRKECEQVAKELRERGISADYYHADMDSNAREKTHMRWSNNKLQIIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPKQSSMVFYENSGLQNLYDIVRYCQSKKECRRAAFSRHFAEPLQDCNGMCDNCASSNEIKEVDVCCHAKLMFSLLQNAQEKNQRMTMLQMVDKMKTEQKKLGSNLRRDEIEQLVVKLILDRVLKEEFQHTAYATNAYVTVGPLAKQVLQGKKMVKLEICSEQKGNAMKSMKKGPASSRLEVNLDELRKELALVDGGIFPHSILSTQQIHMISSQKPDSLEQLEKIIGKLKTDKYGNKILEQVENHSAIDQVDESKEVKQGKTSSAKRPNPNKSGENRAAKK 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5149464 5177313 - Conep12aG0061300.1 Cone12ag0592 449436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0592 702 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Cone12ag0592 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 423 IPR027417 -
Cone12ag0592 702 MobiDBLite consensus disorder prediction 667 683 - -
Cone12ag0592 702 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 297 446 IPR001650 -
Cone12ag0592 702 FunFam ATP-dependent DNA helicase 46 279 - -
Cone12ag0592 702 Pfam DEAD/DEAH box helicase 91 259 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cone12ag0592 702 Pfam HRDC domain 603 661 IPR002121 GO:0003676(InterPro)
Cone12ag0592 702 SUPERFAMILY HRDC-like 596 672 IPR010997 GO:0000166(InterPro)|GO:0044237(InterPro)
Cone12ag0592 702 Gene3D - 480 580 IPR036388 -
Cone12ag0592 702 ProSiteProfiles HRDC domain profile. 594 673 IPR002121 GO:0003676(InterPro)
Cone12ag0592 702 SMART ultradead3 85 288 IPR014001 -
Cone12ag0592 702 CDD SF2_C_RecQ 280 416 - -
Cone12ag0592 702 Pfam Helicase conserved C-terminal domain 305 407 IPR001650 -
Cone12ag0592 702 FunFam ATP-dependent DNA helicase 480 580 - -
Cone12ag0592 702 SMART helicmild6 326 407 IPR001650 -
Cone12ag0592 702 FunFam ATP-dependent DNA helicase 280 476 - -
Cone12ag0592 702 MobiDBLite consensus disorder prediction 666 702 - -
Cone12ag0592 702 Gene3D - 12 279 IPR027417 -
Cone12ag0592 702 CDD DEXHc_RecQ1 71 279 - -
Cone12ag0592 702 Gene3D - 280 477 IPR027417 -
Cone12ag0592 702 NCBIfam RecQ family ATP-dependent DNA helicase 82 515 IPR004589 GO:0004386(InterPro)|GO:0006310(InterPro)
Cone12ag0592 702 Pfam RecQ zinc-binding 419 474 IPR032284 -
Cone12ag0592 702 PANTHER DNA HELICASE RECQ FAMILY MEMBER 68 667 - GO:0000724(PANTHER)|GO:0005694(PANTHER)|GO:0005737(PANTHER)|GO:0006268(PANTHER)|GO:0006281(PANTHER)|GO:0006310(PANTHER)|GO:0009378(PANTHER)|GO:0016592(PANTHER)|GO:0032508(PANTHER)|GO:0043138(PANTHER)
Cone12ag0592 702 Gene3D HRDC domain 597 667 IPR044876 -
Cone12ag0592 702 Coils Coil 3 37 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0592 K10899 - - mtr:11409950 1055.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0592 Cone-Chr12:5149464 Cone3ag0927 Cone-Chr3:4763746 4.71E-111 dispersed
Cone12ag0592 Cone-Chr12:5149464 Cone10ag0900 Cone-Chr10:4653181 6.58E-114 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g914 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0592 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009488 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 33