Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0600 ATGGGAAGCGGACATTCGAGCCTCTTCTCTTGCTTCAGACCGGCGAACCGGACGGGCGGCGAACCGGACCAGAATCAGCAGGAGGTGATTTTCACGCCGTACGATCCGTTGGATGAAACCCTAGGCCACTCCTTCTGCTACGTCCGGTCGTCGGCTCGATTCCTGTCTCCTACTCAGTCAAATCGATTTCCCTCTCCTTCTCACTCTTTCCGTTTCTCGCCCCCTCATGAACCGGGCGTTCCGAAGAACCGGACCGGACCGCCGGAAACCGGGTTCAAGACCATTTCTGGAGCTTCGGTGAGTGCTAATAGCTCTACTCCCAGATCTGTTCTCTTGCTTGAAAATATCTACGACGATGTTACTGAGAGTATGCCTGGCGGAGGTGGTGGTATGAGAGGGAGTATTTTGAACGGCTTTGAAAGTACGTCGTCGTTTAGTGCTCTTCCACTCCAGCCTGTTCCCAGAGGTGGAGCGGCCGAGCCTTCGGGCCCAATGGAGCGAGGTGGCTTCTTCCTCTCTGGCCCAATCGAGCGTGGGGCCCTTTCAGGTCCACTTGATGCCAACGCTGGCTCAGACGGTGGTGGCGGAAGGGTTCCCTTCTCTGCTCCGCTTGGTGGCCCTTACGTAAAAAAGAAGCGGAAGAAGGGCATTTTGGGGATCCACAAGGCATTTTACAGAAACTTCTCTGAGAAGCGGCCTTGGGTGGTTCCGGTCCTCAATTTCATTGGCCGGAGAGATGAATCAACGGCCGGTGATGAGTCCGAGGAGAAAATGGAGAGTAATGTTCAATGGGCCCTGGGTAAAGCAGGGGAGGATCGGGTACACGTAGTTGTATCGGAAGAGCAAGGGTGGTTGTTTGTTGGGATTTATGATGGATTCAACGGCCCTGAGGCACCTGAGTTCTTAATGGGTAATCTGTATCAAGCAGTCTATAATGAACTTCAAGGATTGTTTTGGGAGGTTGAAGAATCAGAGGAGGGATCCAATGCTAATTATAATAACCCATCAAATGTTGCTGCAGAAATTGCAGTATTTGAAAACAATGTAGACCCACCTGCTCCTCCTGATCGAGGGTCAGCAAAGAGAGTTACGTTTCAATCGGATGGTGGATTGGAGAATAGGGTGAGGAGGAGGCGGCTATGGGAATTTTTAGCTGAGGACGATCCTGAATATGGGCTTGACCTCTCAGGTTCAGATAGATTTGCATTTTCAGTAGATGATGCGATAAGTGTAAAGAATGCAGGTTCAGCTGTTAGCAGAAGATGGCTTTTGTTATCGAAACTAAAACATGGGTTATCCAAGCATAGGGGGGAGGGTCATGGGAGAAAGTTGTTTCCATGGAAGCTTGGGTTGGAGGAGAAAGAGAAAGTTGAAGCTGAGAGTAGGGTAGAGGAGAGGTCGGCACAAGCAGGTAAGAAGAGAAAGGAAGGTCCTATAAACCATGAGTTGGTTTTGGGGGCCTTGTCGAGGGCTCTTGAAGTGACCGAGCTTGCATATTTGGATATGACAGATAAGGTGCTTGATACTAGTCCGGAGCTTGCTTTGATGGGGTCTTGCTTATTGGTGGTTTTGATGAGAGACGAGGATGTTTATGTTATGAATGTTGGCGATAGTCGAGCAATAGTTGCTCATTATGAGCCACAAGAAGTGGGTCCCAGCAAGGAGGAAAAGGGAGGAAATCGGTCAGGCCAACAGGGGGGTATAGTTGAGGAGTGGTTGGGTCCAAGTGAAAGGGAAATAACATTAGGGAATGAGGCTTCTACTCAAGAAATGAGATTGGCTGCATTGCAGTTATCTACAGATCATAGCACAAGCATCGAAGAAGAAGTCTTAAGAATCAAGAATGAACACCCAGATGACAAACAGTGCATCATCAACGATAGAGTCAAAGGCCGTCTCAAGGTCACTAGAGCCTTTGGTGCTGGATTTCTGAAACAGCCAAAGTTGAATGCTGCATTATTAGAGATGTTTCGTAATGAGTATATTGGTACCGCACCATACTTATCATGCTCACCTTCACTTCGGCACCATAGATTATGCCCTAGAGATCAGTTCTTAGTCCTCTCATCAGACGGTTTGTATCAATATCTAAGCAATCAAGAAGTGGTTTCTCATGTTGAGAATTTTATGGAGAAGTTTCCAGATGGAGACCCAGCACAACACCTAATAGAGGAGCTTCTTTTCCGTGCAGCCAGAAAAGCTGGGATGGAATTTCATGAATTGTTAGACATACCACAGGGAGACCGAAGAAAGTACCATGATGATGTTACTGTTATGATTATATCACTTGAAGGAAGAATTTGGAAATCTTCAGGAAAGTACCTGTAA 2328 47.72 MGSGHSSLFSCFRPANRTGGEPDQNQQEVIFTPYDPLDETLGHSFCYVRSSARFLSPTQSNRFPSPSHSFRFSPPHEPGVPKNRTGPPETGFKTISGASVSANSSTPRSVLLLENIYDDVTESMPGGGGGMRGSILNGFESTSSFSALPLQPVPRGGAAEPSGPMERGGFFLSGPIERGALSGPLDANAGSDGGGGRVPFSAPLGGPYVKKKRKKGILGIHKAFYRNFSEKRPWVVPVLNFIGRRDESTAGDESEEKMESNVQWALGKAGEDRVHVVVSEEQGWLFVGIYDGFNGPEAPEFLMGNLYQAVYNELQGLFWEVEESEEGSNANYNNPSNVAAEIAVFENNVDPPAPPDRGSAKRVTFQSDGGLENRVRRRRLWEFLAEDDPEYGLDLSGSDRFAFSVDDAISVKNAGSAVSRRWLLLSKLKHGLSKHRGEGHGRKLFPWKLGLEEKEKVEAESRVEERSAQAGKKRKEGPINHELVLGALSRALEVTELAYLDMTDKVLDTSPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAHYEPQEVGPSKEEKGGNRSGQQGGIVEEWLGPSEREITLGNEASTQEMRLAALQLSTDHSTSIEEEVLRIKNEHPDDKQCIINDRVKGRLKVTRAFGAGFLKQPKLNAALLEMFRNEYIGTAPYLSCSPSLRHHRLCPRDQFLVLSSDGLYQYLSNQEVVSHVENFMEKFPDGDPAQHLIEELLFRAARKAGMEFHELLDIPQGDRRKYHDDVTVMIISLEGRIWKSSGKYL 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5331842 5337955 + Conep12aG0062100.1 Cone12ag0600 449444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0600 775 Pfam Protein phosphatase 2C 597 714 IPR001932 -
Cone12ag0600 775 PANTHER PROTEIN PHOSPHATASE 2C 260 763 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cone12ag0600 775 ProSiteProfiles PPM-type phosphatase domain profile. 255 763 IPR001932 -
Cone12ag0600 775 MobiDBLite consensus disorder prediction 1 27 - -
Cone12ag0600 775 SUPERFAMILY PP2C-like 268 764 IPR036457 -
Cone12ag0600 775 MobiDBLite consensus disorder prediction 57 91 - -
Cone12ag0600 775 CDD PP2Cc 480 763 IPR001932 -
Cone12ag0600 775 SMART PP2C_4 255 761 IPR001932 -
Cone12ag0600 775 MobiDBLite consensus disorder prediction 547 568 - -
Cone12ag0600 775 Gene3D - 245 770 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0600 Cone-Chr12:5331842 Cone5ag1149 Cone-Chr5:5179324 1.17E-154 dispersed
Cone12ag0600 Cone-Chr12:5331842 Cone8ag0618 Cone-Chr8:6075605 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0600 - - - 0.0