Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0601 ATGGGTTGTGTTTCTTCCAGTCTGCTAAATCACGATGATGAGTTAAACCAACTCGGCAGCTCCGCCTTAGGCCACCACATTGTCTCTCTCACATCCACCACCTACGGCCTTCTTTCCCTCGACCCGCCTCCGTCAAAAACCCAACCAACGACCCCTCCTCCTCGCGTCACTCTTGGCGCAGTCTTCCTTAGCCCGCTCACCGGACCCAAATCCCTCTGGTCTGAACCCAAACCCCTCCGGTCCGAACCGGAGGTAATCAACTCGTGGGAACTCATGGCCGGCCTAGATGCCTTAGACAGTTTCCGGTTCAAAGAACCAAATCCCAACAAAGAAAACTCAAACCCTAATAACGGTCCTAACCGGTCAGCGGTCAAGTCAACCATTTGCAAGCCGTTGCTAAATGACACAGCTTCGATCGTAAACAAAAAAACATTGGATAACTTGGAGAGGTTGTGCCCGCCGAGAGGAGAGAATAGAGTGGTGATATATACGACATCGTTGCGAGGTGTGAGAAAGACGTTTGAATCGTGCAACGCGGTGCGGTCCGCGATGGAAAGGTTCGGCATAACGATCTGCGAGCGGGATATTTCTATGGATCGCGGGTTTAGAGAAGAGTTGAGGGAATTGATGAGAGGGAAGGAGGAGAGAGAAGGCATTGTCCCACCTAGAGCTTTTGTTAAGGGAAGGTATTTAGGTGGGGTAGAGGAGGTGTTGAGAATGGTGGAGGAAGGGTCGCTGAGTGAGATTCTAGAAGATTTGCCGAGGAAGAGAAGTGGGTTTGTGTGTGAAGGATGTGGAGATGCGAGATTTTTTCCATGTTTTAGATGCAATGGGAGCTGTAAGATAGTAATGGCGACGAAAGAGGAAGAGAGTCGGAAACTGGGGAGAGGTCTTGTTGCGAGGTGCTCTGATTGTAATGAAAATGGATTGATGCTGTGCCCCATTTGTAGCTGA 954 50.1 MGCVSSSLLNHDDELNQLGSSALGHHIVSLTSTTYGLLSLDPPPSKTQPTTPPPRVTLGAVFLSPLTGPKSLWSEPKPLRSEPEVINSWELMAGLDALDSFRFKEPNPNKENSNPNNGPNRSAVKSTICKPLLNDTASIVNKKTLDNLERLCPPRGENRVVIYTTSLRGVRKTFESCNAVRSAMERFGITICERDISMDRGFREELRELMRGKEEREGIVPPRAFVKGRYLGGVEEVLRMVEEGSLSEILEDLPRKRSGFVCEGCGDARFFPCFRCNGSCKIVMATKEEESRKLGRGLVARCSDCNENGLMLCPICS 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5339269 5340222 - Conep12aG0062200.1 Cone12ag0601 449445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0601 317 MobiDBLite consensus disorder prediction 107 124 - -
Cone12ag0601 317 Pfam Glutaredoxin 160 229 IPR002109 -
Cone12ag0601 317 Gene3D Glutaredoxin 158 257 - -
Cone12ag0601 317 CDD GRX_GRX_like 159 313 - -
Cone12ag0601 317 MobiDBLite consensus disorder prediction 102 124 - -
Cone12ag0601 317 SUPERFAMILY Thioredoxin-like 151 251 IPR036249 -
Cone12ag0601 317 PANTHER GLUTAREDOXIN DOMAIN-CONTAINING CYSTEINE-RICH PROTEIN CG12206-RELATED 25 316 - -
Cone12ag0601 317 ProSiteProfiles Glutaredoxin domain profile. 148 257 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0601 K17479 - - vvi:100241093 384.415
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0601 Cone-Chr12:5339269 Cone19ag1155 Cone-Chr19:8191180 1.22E-52 dispersed
Cone12ag0601 Cone-Chr12:5339269 Cone16ag0508 Cone-Chr16:7148890 1.77E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g159 . . . . . . . . . . Cma02g00924 . Car02g00672 . . . . . . . . . . . . . . . . . . Cone8ag0238 Cone12ag0601 . . . . . . . . . . . . . . . Cmo02g00931 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011679 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 30