Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0608 ATGGAGTTTTTCACCAAATCTAAGGCAGTGAAGCTCCGAAGTCACCTTGACAAATACTTAATCGCCGGCGACGACAAAGAAACCGTCCACCAGAGCGATCTCCATCGTCGTGGCGGAAAACATTCTCCGGCAGCCATATGGATAGTAGAAACAGTTGAAGAGAAGAGCCAAACCGTACGGCTCAAAAGCTGCCATGGACGATACCTCAACGCTTCAGATTCCTCCTTCCTCCTCGGCGTGACCGGAAAAAAAGTTCTCCAAACGGAGCGAGATCCGAAGCTGTTGAGCTGGACAATCCAGTGGGAGCCGATACGAGATGGATTTCAGGTCCGGTTGAAGAGCTGGAGCGGCAGTTATTTGCGAGCCAATGGCGGGACCCGGCCATGGCGGAACTCTATAACGCACGATGAACCGCATCGCTCTGCGACCAAGGACTGGGTTCTGTGGGACGTGGAAGTTGTCGATGATCGGGTTTCGGAGCTGATATCCGGGTCGGTTGCGGTTATGGGCCATCTATGGCCCCTGTCTAGCTTTTCTTCCTTGGTTTCTGACGAGGTGGATTCGAAGCAGGGTTCGGGTTCACCGATGGGGGTCGTCCGGTCAAAGTCCATGTCTCCTAGATTGCCTTTGATCCAGACCAACTCCTCCTCTCAAATGGACCTCTTTCACAAAGCCAAATCAGTTCGTCTACGTAGCCACCACCACAAGTACCTCTTAGCCGCCGACGACGAAGAGTCCGTCACCCAAGACCGAAACGGGTCCTCCAGGAACGCCCGATGGACCGTCGAAACCGTACCCGGATCCGGACCTGTTATAATCCGTCTCAAGAGCTGTTACGGCAAGTACCTCACCGCCTCGAACCAACCGTTCCTGCTAGGCGTGACTGGCCGGAAAGTGCTCCAGACTCTACCTAACCGGCTCGACTCCTTGGTCCTGTGGGCACCCGTTAGAGATCGGACCCGGTTCAAGCTCAAGACCCGGTACGGAAATTTCTTGAGGGCTAATGGTGGCTTGCCTCCTTGGAGAAATTCAGTGACGCATGATATTCCTCATAGAACCTCTACTCAGGATTGGATTCTGTGGGAAGTTGATGTTGCTGAGATTCAAGTTCAGTCCCCTGTTCCACCCCTTTCCCATTCCGATTCTTTGGATTTCGATACGAGCTCACAGTCTTCGGTTTCTGTCAAATCCGAGCTACTTGACATATCTAGTGATTTTACTGTGAATTCTTCACCACCCAAATCTGAAGGGAGGATTATAAACTACTGCATAGCTGATGATAATGGTGAAGTGGACGATAAAGATGATGATTCTATGCACCTTAAGAGCCTTTACTCTTTCACCTTTAGAGGTAATGGCGTTGAAGAATTGACTCGTAAATTGGAGGAAGAAACAGGCTTAGAAGATATCATTGTGTGCACTAGAAGTCCGTTGAATCAGAACCTTTACCCTCTTCGGTTGCAGCTTCCTCCAAATAATTTAGCCATGAATGTTGTGGTAGTTCTCAAGTCGTCAAGAGCAATTTGA 1527 50.23 MEFFTKSKAVKLRSHLDKYLIAGDDKETVHQSDLHRRGGKHSPAAIWIVETVEEKSQTVRLKSCHGRYLNASDSSFLLGVTGKKVLQTERDPKLLSWTIQWEPIRDGFQVRLKSWSGSYLRANGGTRPWRNSITHDEPHRSATKDWVLWDVEVVDDRVSELISGSVAVMGHLWPLSSFSSLVSDEVDSKQGSGSPMGVVRSKSMSPRLPLIQTNSSSQMDLFHKAKSVRLRSHHHKYLLAADDEESVTQDRNGSSRNARWTVETVPGSGPVIIRLKSCYGKYLTASNQPFLLGVTGRKVLQTLPNRLDSLVLWAPVRDRTRFKLKTRYGNFLRANGGLPPWRNSVTHDIPHRTSTQDWILWEVDVAEIQVQSPVPPLSHSDSLDFDTSSQSSVSVKSELLDISSDFTVNSSPPKSEGRIINYCIADDNGEVDDKDDDSMHLKSLYSFTFRGNGVEELTRKLEEETGLEDIIVCTRSPLNQNLYPLRLQLPPNNLAMNVVVVLKSSRAI 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5395581 5399358 - Conep12aG0062900.1 Cone12ag0608 449452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0608 508 FunFam BnaC05g19630D protein 223 364 - -
Cone12ag0608 508 Gene3D - 227 346 - -
Cone12ag0608 508 SUPERFAMILY Actin-crosslinking proteins 223 366 IPR008999 -
Cone12ag0608 508 Pfam DUF569 associated ubiquitin-like domain 417 501 IPR054726 -
Cone12ag0608 508 SUPERFAMILY Actin-crosslinking proteins 6 153 IPR008999 -
Cone12ag0608 508 Gene3D - 5 153 - -
Cone12ag0608 508 FunFam BnaC05g19630D protein 5 152 - -
Cone12ag0608 508 Pfam Beta-trefoil domain of unknown function (DUF569) 1 149 IPR007679 -
Cone12ag0608 508 Pfam Beta-trefoil domain of unknown function (DUF569) 219 361 IPR007679 -
Cone12ag0608 508 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 219 505 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0608 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0608 Cone-Chr12:5395581 Cone16ag0880 Cone-Chr16:9198983 2.73E-78 dispersed
Cone12ag0608 Cone-Chr12:5395581 Cone13ag0988 Cone-Chr13:8356897 1.17E-193 wgd
Cone12ag0608 Cone-Chr12:5395581 Cone19ag0981 Cone-Chr19:7408164 7.21E-191 wgd
Cone12ag0608 Cone-Chr12:5395581 Cone8ag0625 Cone-Chr8:6181482 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g835 . Blo16g01138 Bda01g02249 Bda11g01241 Bpe13g00469 . . Bma15g00173 Cmo04g01696 Cmo18g01211 . Cma18g01191 . Car18g01098 . Cpe09g00140 Cpe01g01431 . . . . . . . . . . . . . . Cone13ag0988 Cone19ag0981 Cone8ag0625 Cone12ag0608 . Csa05g02398 Chy10g00958 Cme10g00467 Blo06g00892 . . Bda11g01241 . . Bma01g00078 Bma06g00656 . . . Cma04g01618 . Car04g01660 . . Cpe07g00237 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000505 4 4 2 5 3 3 5 3 3 4 3 3 5 4 4 5 3 4 5 3 4 4 3 4 3 3 3 6 5 2 112