Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone12ag0610 | ATGAGAATAATGATAAAGGGAGGTGTTTGGAAGAACACCGAGGATGAAATTCTTAAAGCTGCGGTCATGAAGTATGGCAAGAACCAGTGGGCTCGTATTTCTTCTCTCCTTGTTCGCAAATCCGCCAAGCAGTGTAAGGCTCGCTGGTACGAGTGGCTAGATCCCTCCATCAAAAAGACTGAGTGGACCAGAGAGGAAGATGAGAAACTGCTTCATCTTGCAAAGCTTATGCCCACGCAATGGAGAACCATTGCTCCAATTGTCGGGCGGACTCCATCACAGTGCCTTGAAAGATATGAGAAACTCCTTGATGCAGCATGTGTTAAGGATGAAAATTATGAACCGGGTGATGACCCACGAAAATTGCGTCCAGGAGAAATTGACCCAAACCCTGAATCGAAGCCTGCACGCCCTGATCCTGTTGACATGGATGAAGATGAGAAGGAAATGCTTTCTGAAGCACGGGCTCGTTTAGCCAACACGAGGGGTAAGAAAGCGAAGAGGAAAGCCCGAGAAAAACAACTTGAAGAGGCCAGAAGGCTTGCTTCTTTACAGAAAAGGAGAGAACTAAAGGCTGCTGGAATTGACAATAGGCACAGGAAGAGGAAGAGGAAGGGAATTGATTATAATGCTGAAATTCCATTTGAGAAGAGGCCTCCTCCTGGCTTTTTCGATGTTGGTGAGGAAGATAGACCTGTGGAGCAGCCCAAGTTCCCGACCACAATTGAAGAACTTGAAGGAAAAAGAAGAGTGGATGTAGAAGCTCAATTGAGAAAGCAAGACATTGCTAAGAACAAAGTTGCCCAGAGACAAGATGCTCCTTCAGCAGTATTGCAAGCCAACAAAATGAATGATCCTGAAACAGTGAGGAAAAGATCAAAACTTATGCTACCTCCTCCCCAGATTTCAGACAAAGAATTGGAGGAAATCGCAAAGATGGGGTATGCTAGTGATCTTCTTTCTGGGAACGAAGAACTCTCAGAAGGGAGTGGAGCTACTCGTGCTCTTCTCGCAAATTATGGACAAACACCACGACAGGGAATGACACCTTTAAGGACCCCACAAAGAACACCTGCTGGAAAGGGGGATGCAATAATGATGGAAGCAGAGAATCTGGCCAGGTTGAGAGAGTCCCAGACGCCATTGTTAGGAGGTCAGAATCCAGAATTGCATCCTTCAGATTTTTCAGGGGTCACTCCCAAGAAAAGGGAAATCCAGACACCAAATCCAATGCTCACACCCTCAGCCACACCCGGTGCTGTCAGTCTTACTCCCAAAAGTGGCATGACTCCAGCTAGGGATGGATTTTCTTTTGGAATGACGCCCAAGGGAACACCCATAAGGGATGAGTTACATATTAATGAAGATATGGATTTGCATGATAGTGCAAAACTTGAGCGGCAGAGACAAGCGGATTTGAAGAGGAATTTGCGATCGGGTTTAAGCGTATTACCACAGCCCAGGCATGAGTACCAGATAGTAATTGAGCAACCTCCAGAAGATGATGAAGAGCCAGAGCAGAAAATTGAAGAAGATATGTCAGATAGAATTGCCAGGGAAAGGGCAGAGGAAGAAGCAAGGCAGCAAGCACTACTTAGGAAGAGATCAAAAGTGCTGCAGAGGGAGCTCCCTAGACCTCCTGTTGCTTCATTGGACCTTATCAGAAATTCTTTGTTGAGAGCTGATGGAGACAAGAGTTCTTTTGTACCTCCTACTTCAATTGAGCAAGCTGATGAGATGGTAAGAAAGGAGCTTCTAGCATTACTGGAGCATGATAATGCAAAGTACCCACTTGATGAAATAGTTATCAAGGAGAAAAAGAAAGGGGTTAAGGCCCCTGCAAGAGAACCTGCTGCTATCCCTGCAATAGAAGATTTTGAAGAAGATGATCTCAAAGAGGCTGATCATTTAATAAGGGAAGAGGTTCAGTATCTTCGAGTTGCAATGGGACATGAAAATGAATCCCTTGACGAATTTGTTGAAGCGCATACAACGTGCTTGAATGATCTGATGTATTTCCCTACCAGGAATGCTTATGGTCTTTCAAGCGTAGCTGGAAACTCTGAGAAACTGGCCGCTTTGCAAAATGAATTTGAGAATGTGAAAAAGAAAATGGATGATGATACTGATAAGGCAGTCCGGCTTGAGAAAAAAGTTAAACTTCTCACACAGGGTTATGAGATGCGGGCTAAATCAAGTCTTTGGCCACAAATTGAGGCAACTTTTAAGCAGATGGACACTGCTGCCACAGAACTCGAGTGCTTCCAGGCTTTACAGAAGCAAGAGCAATTAGCCTCATCACACAGGATAAATACTCTCTGGGAGGAGGTCCAGAAGCAAAAAGAGCTTGAACAAACCCTGCAGAGGCGATATGGAGATCTTCAAGTGGAGTTGGAGAGAATACAACACCTCATGGATCAGAACATAAAACAAGAAGTTCAAAAAAAGCAGGAAGAAGAAATTGCAGTTGAAAATCAAACTGTTGAACAAAATACAGCAGACCTTACCGAGCTGACTGTCATACCAAATGATCTAATAATAACAGGTACCTCTGATGTTGCCATAGAAGAAGAACAAGCCATCTCTGTTGTGGAAAATAATGTAATAACCAAGAATTCTGAGCAAGTCGAAGATGTTGAAAATCAGAAGGATGGTGTAGTTGAATCTGAAAACCGAGAAGTTGATTCAACTAAAGAAGAACAAACTCTCCGAGAATAA | 2718 | 43.97 | MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDNRHRKRKRKGIDYNAEIPFEKRPPPGFFDVGEEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKNKVAQRQDAPSAVLQANKMNDPETVRKRSKLMLPPPQISDKELEEIAKMGYASDLLSGNEELSEGSGATRALLANYGQTPRQGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGQNPELHPSDFSGVTPKKREIQTPNPMLTPSATPGAVSLTPKSGMTPARDGFSFGMTPKGTPIRDELHINEDMDLHDSAKLERQRQADLKRNLRSGLSVLPQPRHEYQIVIEQPPEDDEEPEQKIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPVASLDLIRNSLLRADGDKSSFVPPTSIEQADEMVRKELLALLEHDNAKYPLDEIVIKEKKKGVKAPAREPAAIPAIEDFEEDDLKEADHLIREEVQYLRVAMGHENESLDEFVEAHTTCLNDLMYFPTRNAYGLSSVAGNSEKLAALQNEFENVKKKMDDDTDKAVRLEKKVKLLTQGYEMRAKSSLWPQIEATFKQMDTAATELECFQALQKQEQLASSHRINTLWEEVQKQKELEQTLQRRYGDLQVELERIQHLMDQNIKQEVQKKQEEEIAVENQTVEQNTADLTELTVIPNDLIITGTSDVAIEEEQAISVVENNVITKNSEQVEDVENQKDGVVESENREVDSTKEEQTLRE | 905 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 5408842 | 5415510 | + | Conep12aG0063100.1 | Cone12ag0610 | 449454 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone12ag0610 | 905 | Coils | Coil | 684 | 718 | - | - | |
Cone12ag0610 | 905 | MobiDBLite | consensus disorder prediction | 341 | 360 | - | - | |
Cone12ag0610 | 905 | Coils | Coil | 167 | 187 | - | - | |
Cone12ag0610 | 905 | Pfam | Myb-like DNA-binding domain | 10 | 70 | - | - | |
Cone12ag0610 | 905 | MobiDBLite | consensus disorder prediction | 875 | 905 | - | - | |
Cone12ag0610 | 905 | ProSiteProfiles | Myb-like domain profile. | 2 | 53 | IPR001005 | - | |
Cone12ag0610 | 905 | MobiDBLite | consensus disorder prediction | 157 | 176 | - | - | |
Cone12ag0610 | 905 | Pfam | pre-mRNA splicing factor component | 407 | 657 | IPR021786 | - | |
Cone12ag0610 | 905 | MobiDBLite | consensus disorder prediction | 263 | 288 | - | - | |
Cone12ag0610 | 905 | CDD | SANT | 10 | 53 | IPR001005 | - | |
Cone12ag0610 | 905 | MobiDBLite | consensus disorder prediction | 222 | 238 | - | - | |
Cone12ag0610 | 905 | FunFam | CDC5 cell division cycle 5-like | 5 | 59 | - | - | |
Cone12ag0610 | 905 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 58 | 107 | IPR017930 | - | |
Cone12ag0610 | 905 | CDD | SANT_CDC5_II | 55 | 106 | IPR047240 | - | |
Cone12ag0610 | 905 | MobiDBLite | consensus disorder prediction | 382 | 441 | - | - | |
Cone12ag0610 | 905 | FunFam | CDC5 cell division cycle 5-like | 60 | 120 | - | - | |
Cone12ag0610 | 905 | Gene3D | - | 5 | 59 | - | - | |
Cone12ag0610 | 905 | SMART | sant | 58 | 105 | IPR001005 | - | |
Cone12ag0610 | 905 | SMART | sant | 6 | 55 | IPR001005 | - | |
Cone12ag0610 | 905 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 2 | 57 | IPR017930 | - | |
Cone12ag0610 | 905 | ProSiteProfiles | Myb-like domain profile. | 54 | 103 | IPR001005 | - | |
Cone12ag0610 | 905 | MobiDBLite | consensus disorder prediction | 400 | 424 | - | - | |
Cone12ag0610 | 905 | Gene3D | - | 60 | 114 | - | - | |
Cone12ag0610 | 905 | PANTHER | CELL DIVISION CYCLE 5-LIKE PROTEIN | 1 | 806 | IPR047242 | GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0000974(InterPro)|GO:0000974(PANTHER)|GO:0005681(PANTHER) | |
Cone12ag0610 | 905 | MobiDBLite | consensus disorder prediction | 213 | 238 | - | - | |
Cone12ag0610 | 905 | MobiDBLite | consensus disorder prediction | 113 | 150 | - | - | |
Cone12ag0610 | 905 | SUPERFAMILY | Homeodomain-like | 33 | 106 | IPR009057 | - | |
Cone12ag0610 | 905 | MobiDBLite | consensus disorder prediction | 876 | 905 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag0610 | Cone-Chr12:5408842 | Cone6ag1069 | Cone-Chr6:6442206 | 5.02E-12 | dispersed | |
Cone12ag0610 | Cone-Chr12:5408842 | Cone8ag0627 | Cone-Chr8:6190989 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44461 | PF13855 | LRR_8 | 2.40E-06 | CL0022 | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone12ag0610 | K12860 | - | vvi:100243262 | 1396.33 |