Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0610 ATGAGAATAATGATAAAGGGAGGTGTTTGGAAGAACACCGAGGATGAAATTCTTAAAGCTGCGGTCATGAAGTATGGCAAGAACCAGTGGGCTCGTATTTCTTCTCTCCTTGTTCGCAAATCCGCCAAGCAGTGTAAGGCTCGCTGGTACGAGTGGCTAGATCCCTCCATCAAAAAGACTGAGTGGACCAGAGAGGAAGATGAGAAACTGCTTCATCTTGCAAAGCTTATGCCCACGCAATGGAGAACCATTGCTCCAATTGTCGGGCGGACTCCATCACAGTGCCTTGAAAGATATGAGAAACTCCTTGATGCAGCATGTGTTAAGGATGAAAATTATGAACCGGGTGATGACCCACGAAAATTGCGTCCAGGAGAAATTGACCCAAACCCTGAATCGAAGCCTGCACGCCCTGATCCTGTTGACATGGATGAAGATGAGAAGGAAATGCTTTCTGAAGCACGGGCTCGTTTAGCCAACACGAGGGGTAAGAAAGCGAAGAGGAAAGCCCGAGAAAAACAACTTGAAGAGGCCAGAAGGCTTGCTTCTTTACAGAAAAGGAGAGAACTAAAGGCTGCTGGAATTGACAATAGGCACAGGAAGAGGAAGAGGAAGGGAATTGATTATAATGCTGAAATTCCATTTGAGAAGAGGCCTCCTCCTGGCTTTTTCGATGTTGGTGAGGAAGATAGACCTGTGGAGCAGCCCAAGTTCCCGACCACAATTGAAGAACTTGAAGGAAAAAGAAGAGTGGATGTAGAAGCTCAATTGAGAAAGCAAGACATTGCTAAGAACAAAGTTGCCCAGAGACAAGATGCTCCTTCAGCAGTATTGCAAGCCAACAAAATGAATGATCCTGAAACAGTGAGGAAAAGATCAAAACTTATGCTACCTCCTCCCCAGATTTCAGACAAAGAATTGGAGGAAATCGCAAAGATGGGGTATGCTAGTGATCTTCTTTCTGGGAACGAAGAACTCTCAGAAGGGAGTGGAGCTACTCGTGCTCTTCTCGCAAATTATGGACAAACACCACGACAGGGAATGACACCTTTAAGGACCCCACAAAGAACACCTGCTGGAAAGGGGGATGCAATAATGATGGAAGCAGAGAATCTGGCCAGGTTGAGAGAGTCCCAGACGCCATTGTTAGGAGGTCAGAATCCAGAATTGCATCCTTCAGATTTTTCAGGGGTCACTCCCAAGAAAAGGGAAATCCAGACACCAAATCCAATGCTCACACCCTCAGCCACACCCGGTGCTGTCAGTCTTACTCCCAAAAGTGGCATGACTCCAGCTAGGGATGGATTTTCTTTTGGAATGACGCCCAAGGGAACACCCATAAGGGATGAGTTACATATTAATGAAGATATGGATTTGCATGATAGTGCAAAACTTGAGCGGCAGAGACAAGCGGATTTGAAGAGGAATTTGCGATCGGGTTTAAGCGTATTACCACAGCCCAGGCATGAGTACCAGATAGTAATTGAGCAACCTCCAGAAGATGATGAAGAGCCAGAGCAGAAAATTGAAGAAGATATGTCAGATAGAATTGCCAGGGAAAGGGCAGAGGAAGAAGCAAGGCAGCAAGCACTACTTAGGAAGAGATCAAAAGTGCTGCAGAGGGAGCTCCCTAGACCTCCTGTTGCTTCATTGGACCTTATCAGAAATTCTTTGTTGAGAGCTGATGGAGACAAGAGTTCTTTTGTACCTCCTACTTCAATTGAGCAAGCTGATGAGATGGTAAGAAAGGAGCTTCTAGCATTACTGGAGCATGATAATGCAAAGTACCCACTTGATGAAATAGTTATCAAGGAGAAAAAGAAAGGGGTTAAGGCCCCTGCAAGAGAACCTGCTGCTATCCCTGCAATAGAAGATTTTGAAGAAGATGATCTCAAAGAGGCTGATCATTTAATAAGGGAAGAGGTTCAGTATCTTCGAGTTGCAATGGGACATGAAAATGAATCCCTTGACGAATTTGTTGAAGCGCATACAACGTGCTTGAATGATCTGATGTATTTCCCTACCAGGAATGCTTATGGTCTTTCAAGCGTAGCTGGAAACTCTGAGAAACTGGCCGCTTTGCAAAATGAATTTGAGAATGTGAAAAAGAAAATGGATGATGATACTGATAAGGCAGTCCGGCTTGAGAAAAAAGTTAAACTTCTCACACAGGGTTATGAGATGCGGGCTAAATCAAGTCTTTGGCCACAAATTGAGGCAACTTTTAAGCAGATGGACACTGCTGCCACAGAACTCGAGTGCTTCCAGGCTTTACAGAAGCAAGAGCAATTAGCCTCATCACACAGGATAAATACTCTCTGGGAGGAGGTCCAGAAGCAAAAAGAGCTTGAACAAACCCTGCAGAGGCGATATGGAGATCTTCAAGTGGAGTTGGAGAGAATACAACACCTCATGGATCAGAACATAAAACAAGAAGTTCAAAAAAAGCAGGAAGAAGAAATTGCAGTTGAAAATCAAACTGTTGAACAAAATACAGCAGACCTTACCGAGCTGACTGTCATACCAAATGATCTAATAATAACAGGTACCTCTGATGTTGCCATAGAAGAAGAACAAGCCATCTCTGTTGTGGAAAATAATGTAATAACCAAGAATTCTGAGCAAGTCGAAGATGTTGAAAATCAGAAGGATGGTGTAGTTGAATCTGAAAACCGAGAAGTTGATTCAACTAAAGAAGAACAAACTCTCCGAGAATAA 2718 43.97 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDNRHRKRKRKGIDYNAEIPFEKRPPPGFFDVGEEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKNKVAQRQDAPSAVLQANKMNDPETVRKRSKLMLPPPQISDKELEEIAKMGYASDLLSGNEELSEGSGATRALLANYGQTPRQGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGQNPELHPSDFSGVTPKKREIQTPNPMLTPSATPGAVSLTPKSGMTPARDGFSFGMTPKGTPIRDELHINEDMDLHDSAKLERQRQADLKRNLRSGLSVLPQPRHEYQIVIEQPPEDDEEPEQKIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPVASLDLIRNSLLRADGDKSSFVPPTSIEQADEMVRKELLALLEHDNAKYPLDEIVIKEKKKGVKAPAREPAAIPAIEDFEEDDLKEADHLIREEVQYLRVAMGHENESLDEFVEAHTTCLNDLMYFPTRNAYGLSSVAGNSEKLAALQNEFENVKKKMDDDTDKAVRLEKKVKLLTQGYEMRAKSSLWPQIEATFKQMDTAATELECFQALQKQEQLASSHRINTLWEEVQKQKELEQTLQRRYGDLQVELERIQHLMDQNIKQEVQKKQEEEIAVENQTVEQNTADLTELTVIPNDLIITGTSDVAIEEEQAISVVENNVITKNSEQVEDVENQKDGVVESENREVDSTKEEQTLRE 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5408842 5415510 + Conep12aG0063100.1 Cone12ag0610 449454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0610 905 Coils Coil 684 718 - -
Cone12ag0610 905 MobiDBLite consensus disorder prediction 341 360 - -
Cone12ag0610 905 Coils Coil 167 187 - -
Cone12ag0610 905 Pfam Myb-like DNA-binding domain 10 70 - -
Cone12ag0610 905 MobiDBLite consensus disorder prediction 875 905 - -
Cone12ag0610 905 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cone12ag0610 905 MobiDBLite consensus disorder prediction 157 176 - -
Cone12ag0610 905 Pfam pre-mRNA splicing factor component 407 657 IPR021786 -
Cone12ag0610 905 MobiDBLite consensus disorder prediction 263 288 - -
Cone12ag0610 905 CDD SANT 10 53 IPR001005 -
Cone12ag0610 905 MobiDBLite consensus disorder prediction 222 238 - -
Cone12ag0610 905 FunFam CDC5 cell division cycle 5-like 5 59 - -
Cone12ag0610 905 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cone12ag0610 905 CDD SANT_CDC5_II 55 106 IPR047240 -
Cone12ag0610 905 MobiDBLite consensus disorder prediction 382 441 - -
Cone12ag0610 905 FunFam CDC5 cell division cycle 5-like 60 120 - -
Cone12ag0610 905 Gene3D - 5 59 - -
Cone12ag0610 905 SMART sant 58 105 IPR001005 -
Cone12ag0610 905 SMART sant 6 55 IPR001005 -
Cone12ag0610 905 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Cone12ag0610 905 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Cone12ag0610 905 MobiDBLite consensus disorder prediction 400 424 - -
Cone12ag0610 905 Gene3D - 60 114 - -
Cone12ag0610 905 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 806 IPR047242 GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0000974(InterPro)|GO:0000974(PANTHER)|GO:0005681(PANTHER)
Cone12ag0610 905 MobiDBLite consensus disorder prediction 213 238 - -
Cone12ag0610 905 MobiDBLite consensus disorder prediction 113 150 - -
Cone12ag0610 905 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Cone12ag0610 905 MobiDBLite consensus disorder prediction 876 905 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0610 Cone-Chr12:5408842 Cone6ag1069 Cone-Chr6:6442206 5.02E-12 dispersed
Cone12ag0610 Cone-Chr12:5408842 Cone8ag0627 Cone-Chr8:6190989 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44461 PF13855 LRR_8 2.40E-06 CL0022 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0610 K12860 - vvi:100243262 1396.33