Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0610 ATGAGAATAATGATAAAGGGAGGTGTTTGGAAGAACACCGAGGATGAAATTCTTAAAGCTGCGGTCATGAAGTATGGCAAGAACCAGTGGGCTCGTATTTCTTCTCTCCTTGTTCGCAAATCCGCCAAGCAGTGTAAGGCTCGCTGGTACGAGTGGCTAGATCCCTCCATCAAAAAGACTGAGTGGACCAGAGAGGAAGATGAGAAACTGCTTCATCTTGCAAAGCTTATGCCCACGCAATGGAGAACCATTGCTCCAATTGTCGGGCGGACTCCATCACAGTGCCTTGAAAGATATGAGAAACTCCTTGATGCAGCATGTGTTAAGGATGAAAATTATGAACCGGGTGATGACCCACGAAAATTGCGTCCAGGAGAAATTGACCCAAACCCTGAATCGAAGCCTGCACGCCCTGATCCTGTTGACATGGATGAAGATGAGAAGGAAATGCTTTCTGAAGCACGGGCTCGTTTAGCCAACACGAGGGGTAAGAAAGCGAAGAGGAAAGCCCGAGAAAAACAACTTGAAGAGGCCAGAAGGCTTGCTTCTTTACAGAAAAGGAGAGAACTAAAGGCTGCTGGAATTGACAATAGGCACAGGAAGAGGAAGAGGAAGGGAATTGATTATAATGCTGAAATTCCATTTGAGAAGAGGCCTCCTCCTGGCTTTTTCGATGTTGGTGAGGAAGATAGACCTGTGGAGCAGCCCAAGTTCCCGACCACAATTGAAGAACTTGAAGGAAAAAGAAGAGTGGATGTAGAAGCTCAATTGAGAAAGCAAGACATTGCTAAGAACAAAGTTGCCCAGAGACAAGATGCTCCTTCAGCAGTATTGCAAGCCAACAAAATGAATGATCCTGAAACAGTGAGGAAAAGATCAAAACTTATGCTACCTCCTCCCCAGATTTCAGACAAAGAATTGGAGGAAATCGCAAAGATGGGGTATGCTAGTGATCTTCTTTCTGGGAACGAAGAACTCTCAGAAGGGAGTGGAGCTACTCGTGCTCTTCTCGCAAATTATGGACAAACACCACGACAGGGAATGACACCTTTAAGGACCCCACAAAGAACACCTGCTGGAAAGGGGGATGCAATAATGATGGAAGCAGAGAATCTGGCCAGGTTGAGAGAGTCCCAGACGCCATTGTTAGGAGGTCAGAATCCAGAATTGCATCCTTCAGATTTTTCAGGGGTCACTCCCAAGAAAAGGGAAATCCAGACACCAAATCCAATGCTCACACCCTCAGCCACACCCGGTGCTGTCAGTCTTACTCCCAAAAGTGGCATGACTCCAGCTAGGGATGGATTTTCTTTTGGAATGACGCCCAAGGGAACACCCATAAGGGATGAGTTACATATTAATGAAGATATGGATTTGCATGATAGTGCAAAACTTGAGCGGCAGAGACAAGCGGATTTGAAGAGGAATTTGCGATCGGGTTTAAGCGTATTACCACAGCCCAGGCATGAGTACCAGATAGTAATTGAGCAACCTCCAGAAGATGATGAAGAGCCAGAGCAGAAAATTGAAGAAGATATGTCAGATAGAATTGCCAGGGAAAGGGCAGAGGAAGAAGCAAGGCAGCAAGCACTACTTAGGAAGAGATCAAAAGTGCTGCAGAGGGAGCTCCCTAGACCTCCTGTTGCTTCATTGGACCTTATCAGAAATTCTTTGTTGAGAGCTGATGGAGACAAGAGTTCTTTTGTACCTCCTACTTCAATTGAGCAAGCTGATGAGATGGTAAGAAAGGAGCTTCTAGCATTACTGGAGCATGATAATGCAAAGTACCCACTTGATGAAATAGTTATCAAGGAGAAAAAGAAAGGGGTTAAGGCCCCTGCAAGAGAACCTGCTGCTATCCCTGCAATAGAAGATTTTGAAGAAGATGATCTCAAAGAGGCTGATCATTTAATAAGGGAAGAGGTTCAGTATCTTCGAGTTGCAATGGGACATGAAAATGAATCCCTTGACGAATTTGTTGAAGCGCATACAACGTGCTTGAATGATCTGATGTATTTCCCTACCAGGAATGCTTATGGTCTTTCAAGCGTAGCTGGAAACTCTGAGAAACTGGCCGCTTTGCAAAATGAATTTGAGAATGTGAAAAAGAAAATGGATGATGATACTGATAAGGCAGTCCGGCTTGAGAAAAAAGTTAAACTTCTCACACAGGGTTATGAGATGCGGGCTAAATCAAGTCTTTGGCCACAAATTGAGGCAACTTTTAAGCAGATGGACACTGCTGCCACAGAACTCGAGTGCTTCCAGGCTTTACAGAAGCAAGAGCAATTAGCCTCATCACACAGGATAAATACTCTCTGGGAGGAGGTCCAGAAGCAAAAAGAGCTTGAACAAACCCTGCAGAGGCGATATGGAGATCTTCAAGTGGAGTTGGAGAGAATACAACACCTCATGGATCAGAACATAAAACAAGAAGTTCAAAAAAAGCAGGAAGAAGAAATTGCAGTTGAAAATCAAACTGTTGAACAAAATACAGCAGACCTTACCGAGCTGACTGTCATACCAAATGATCTAATAATAACAGGTACCTCTGATGTTGCCATAGAAGAAGAACAAGCCATCTCTGTTGTGGAAAATAATGTAATAACCAAGAATTCTGAGCAAGTCGAAGATGTTGAAAATCAGAAGGATGGTGTAGTTGAATCTGAAAACCGAGAAGTTGATTCAACTAAAGAAGAACAAACTCTCCGAGAATAA 2718 43.97 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDNRHRKRKRKGIDYNAEIPFEKRPPPGFFDVGEEDRPVEQPKFPTTIEELEGKRRVDVEAQLRKQDIAKNKVAQRQDAPSAVLQANKMNDPETVRKRSKLMLPPPQISDKELEEIAKMGYASDLLSGNEELSEGSGATRALLANYGQTPRQGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGQNPELHPSDFSGVTPKKREIQTPNPMLTPSATPGAVSLTPKSGMTPARDGFSFGMTPKGTPIRDELHINEDMDLHDSAKLERQRQADLKRNLRSGLSVLPQPRHEYQIVIEQPPEDDEEPEQKIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPVASLDLIRNSLLRADGDKSSFVPPTSIEQADEMVRKELLALLEHDNAKYPLDEIVIKEKKKGVKAPAREPAAIPAIEDFEEDDLKEADHLIREEVQYLRVAMGHENESLDEFVEAHTTCLNDLMYFPTRNAYGLSSVAGNSEKLAALQNEFENVKKKMDDDTDKAVRLEKKVKLLTQGYEMRAKSSLWPQIEATFKQMDTAATELECFQALQKQEQLASSHRINTLWEEVQKQKELEQTLQRRYGDLQVELERIQHLMDQNIKQEVQKKQEEEIAVENQTVEQNTADLTELTVIPNDLIITGTSDVAIEEEQAISVVENNVITKNSEQVEDVENQKDGVVESENREVDSTKEEQTLRE 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5408842 5415510 + Conep12aG0063100.1 Cone12ag0610 449454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0610 905 Coils Coil 684 718 - -
Cone12ag0610 905 MobiDBLite consensus disorder prediction 341 360 - -
Cone12ag0610 905 Coils Coil 167 187 - -
Cone12ag0610 905 Pfam Myb-like DNA-binding domain 10 70 - -
Cone12ag0610 905 MobiDBLite consensus disorder prediction 875 905 - -
Cone12ag0610 905 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cone12ag0610 905 MobiDBLite consensus disorder prediction 157 176 - -
Cone12ag0610 905 Pfam pre-mRNA splicing factor component 407 657 IPR021786 -
Cone12ag0610 905 MobiDBLite consensus disorder prediction 263 288 - -
Cone12ag0610 905 CDD SANT 10 53 IPR001005 -
Cone12ag0610 905 MobiDBLite consensus disorder prediction 222 238 - -
Cone12ag0610 905 FunFam CDC5 cell division cycle 5-like 5 59 - -
Cone12ag0610 905 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cone12ag0610 905 CDD SANT_CDC5_II 55 106 IPR047240 -
Cone12ag0610 905 MobiDBLite consensus disorder prediction 382 441 - -
Cone12ag0610 905 FunFam CDC5 cell division cycle 5-like 60 120 - -
Cone12ag0610 905 Gene3D - 5 59 - -
Cone12ag0610 905 SMART sant 58 105 IPR001005 -
Cone12ag0610 905 SMART sant 6 55 IPR001005 -
Cone12ag0610 905 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Cone12ag0610 905 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Cone12ag0610 905 MobiDBLite consensus disorder prediction 400 424 - -
Cone12ag0610 905 Gene3D - 60 114 - -
Cone12ag0610 905 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 806 IPR047242 GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0000974(InterPro)|GO:0000974(PANTHER)|GO:0005681(PANTHER)
Cone12ag0610 905 MobiDBLite consensus disorder prediction 213 238 - -
Cone12ag0610 905 MobiDBLite consensus disorder prediction 113 150 - -
Cone12ag0610 905 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Cone12ag0610 905 MobiDBLite consensus disorder prediction 876 905 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0610 K12860 - - vvi:100243262 1396.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0610 Cone-Chr12:5408842 Cone6ag1069 Cone-Chr6:6442206 5.02E-12 dispersed
Cone12ag0610 Cone-Chr12:5408842 Cone8ag0627 Cone-Chr8:6190989 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone12ag0610 . 1 819 MYB-Related Transcription Factor Family AT1G09770 76.5 0.0e+00 1192.6
Cone8ag0627 . 1 820 MYB-Related Transcription Factor Family AT1G09770 75.4 0.0e+00 1173.7
Cone6ag1069 . 200 677 MYB-Related Transcription Factor Family AT3G18100 55.5 6.6e-151 531.9
Cone6ag1069 . 200 677 MYB-Related Transcription Factor Family AT3G18100 55.5 6.6e-151 531.9
Cone12ag0610 . 1 819 MYB-Related Transcription Factor Family AT1G09770 76.5 0.0e+00 1192.6
Cone8ag0627 . 1 820 MYB-Related Transcription Factor Family AT1G09770 75.4 0.0e+00 1173.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44461 PF13855 LRR_8 2.40E-06 CL0022 Cone TF