Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0612 ATGAAGACGGTGAGATTGGGGGATCGAAAATCGAGACTGAGTAGTGGAAGTGTTTCTTCTCGACCGATTCAACTCGGCCGAGTTCAGCCGCAAGCACCTGGTCACCGTACTATCTTCTGTAATGATCGGGAGGCTAATCTTCCAGTCAAGTTTAAGGGAAATTCGGTTTCGACGACCAAGTACAACTTCTTTACCTTTTTACCAAAAGGGCTATTTGAACAGTTTAGGCGGGTCGCTAATCTCTACTTTCTTACGATTTCCATTTTATCTGCAACACCGATCAGTCCTGTTCATCCAATAACAAATGTTATCCCCCTGAGTATAGTTCTACTTGTTTCTCTTATAAAAGAAGCCTTTGAGGACTGGAAGCGTTTTCAGAATGATATGGCAATAAATAATAATTCTGTTAAAGTGTTGCAAGATCAAAAGTGGGAGACTATTCCCTGGAAAAAGTTACAGGTTGGAGACATTGTCAAGGTTAAGCAGGATGGATATTTTCCTGCAGATCTGCTTTTCCTTGCTAGTACAAATTCAGATGGCGTCTGCTATATTGAGACTGCGAACTTGGATGGGGAAACAAATTTGAAGATCAGAAAGGCATTGGAAAAGACCTGGGATTACTTGATTCCTGATAAAGCATCTGAATTCAAAGGTGAAGTGCAATGTGAGCAACCAAACAATTCATTATACACTTTCACTGGAAATCTTATCATACAGAAACAAACGTTGCCTCTCAGCCCAAACCAGCTTCTACTGCGAGGATGTAGCCTTAGGAACACTGAGTACATTGTTGGAGCTGTCATTTTTACAGGTCACGAAACAAAGGTTATGATGAACACCATGAATGTTCCTTCCAAAAGAAGTACCCTGGAGAGGAAACTTGACAAACTTATACTGGCGCTGTTTGGTACTCTATTTGTTATGTGTCTGATTGGAGCCATTGGCAGTGGTGTGTTCATAAACGGCAAGTACTACTACTTAGCTCTTGATAGAGGCCGAGAAGATCAGTTCAACCCTAATAACCGTATTCTGGTCGTCATTCTGACAATGTTTACCCTAATCACTCTGTACTCCACAATTATTCCCATCTCACTATATGTTTCCATTGAGATGATTAAATTTATCCAGTCAACTCAGTTTATCAATAAGGACTTAAATATGTTCCATGTTGAGAGCAACACCCCTGCTTTGGCTAGGACTTCTAATCTGAATGAGGAACTTGGTCAGGTTGAATACATATTTTCTGACAAAACTGGAACCCTAACCAGAAACTTAATGGAGTTCTTTAAGTGTTCAATTGGAGGAGAGATTTATGGCACTGGCATCACGGAAATAGAGAGGGGACTTTACCAGCGGAATGGGATGAAAGTTGACGAGGTGCAAAAGTCAGCTGGCGCAGTCCAAGAGAAAGGCTTTAATTTTGATGACTCTAGGCTTACTCGAGGAGCATGGAGGAATGAGCCTCATTCAGATCTATGCAAGGAATTTTTCAGATGCCTTGCCATATGCCACACTGTGCTTCCTGAAGGTAATGAATCCCCTGAAAAGATCACATATCAAGCTGCATCACCAGATGAGGCTGCTTTGGTAACTGCTGCAAAAAATTTTGGTTTCTTCTTTTACAGGCGTACACCTACCACGATTCATGTTAGTGAATCTCATGTTGAGCAGATGGGTAAAACCCAAGATGTGTCTTATGAGATTCTAAATGTCCTTGAGTTTAATAGTACGAGGAAACGTCAGTCTGTGGTATGTCGTTATCCAGATGGCAGGCTTGTTTTGTACTGCAAGGGTGCTGATAATGTAATCTATGAGCGATTGGCTGATGGAAGTAATGAATTAAAGAAAGCAACTAGGGCACACTTGGAGCAATTTGGGTCTTCTGGATTACGTACCTTGTGCCTGGCTTATAGGGATTTGAGTTCTGATATATATGAAAGTTGGAATGAGAAATTCATTCAGGCTAAATCTTCTTTGCGGGACCGGGAAAAGAAGTTGGATGAGATTGCTGAACTCATAGAAAAAGATCTTATTTTGATTGGTTGCACTGCCATAGAAGACAAGCTTCAAGAAGGAGTACCAAATTGTATAGAGACACTTTGTAGAGCTGGTATCAAGATCTGGGTGCTTACAGGGGACAAAATGGAAACGGCAATAAATATAGCTTATGCATGCAATTTAATTAACAATGAAATGAAACAATTCATTATCAGTTCGGAAACTGATGCTATCAGGGAAGTTGAGAATAGGGGTGACCAAGTAGAAATTGCTCGCTTTACAAGAGAAGAAGTCAAAAAAGAGCTGAAGAGGTGTCTTGAGGAAGCACAAGAAAACTTGCGCACTGCATCTGGACCAAAATTAGCACTTGTAATAGATGGAAAATGTCTGATGTATGCATTAGACCCAAGCTTGCGAGTGATGCTACTTAATCTGAGCTTGAACTGCAGCTCAGTTGTTTGTTGCCGAGTTTCTCCTCTTCAGAAAGCACAGGTGACAAGTTTGGTCAGAAAAGGTGCACGGAAAATAACACTTAGCATTGGTGATGGTGCCAACGATGTCAGCATGATTCAAGCAGCTCATGTTGGTGTTGGAATTAGTGGCCAGGAAGGGATGCAGGCAGTGATGGCTAGTGATTTTGCAATTGCCCAATTTCGGTTTCTCACTGATCTACTTCTTGTACATGGGCGATGGTCATATCTTAGAATAAGCAAGGTCGTGATGTATTTCTTTTACAAGAATCTTACATTCACTTTGACTCAATTTTGGTTCACCTTCCATACTGGATTTTCTGGTCAAAGATTCTATGATGATTGGTTTCAATCATTATACAATGTCATATTCACTGCTCTTCCTGTGATAATTTTTGGGCTTTTTGACAAGGATGTCAGTTCCTCACTTTCCAAGAAATATCCTGAGCTCTACATGGAAGGAATAAGAAATACATTTTTCAAGTGGAGAGTTGTACTGATTTGGGCTTTCTTTTCAATTTACCAATCTCTAGTCTTCTATTGTTTTGTGACTGCTTCTAGTAAAAGCAGTCAAAATTCTTCTGGAAAGTTATTCGGCCTTTGGGACGTCAGCACAATGGCTTTCACTTGTATTGTGGTTGCTGTCAACTTACGTCTGCTTATGCTCTGCAATTCAATCACTAGGTGGCATTATATAGGTGTTGGGGGAAGCATTTTAGCATGGTTCATATTCATTTTCATGTATTCTGGTATAATGACTCCACAAGATAGGCAGGAGAATGTATACTCTGTCATTTTTGTCTTAATGAGTACATTCTACTTCTACCTCACCGTTCTTCTTGTTCCTATAGTTGCCCTACTTTGCGACTTTGTTTACCAAGGGATTCAAAGATGGTTTTTCCCGTATGATTATCAAATAGTTCAAGAAATTCACAGACACGAGCCAGAAGGTAGAAGCATGGCGGGATTGCTTGAGATCAGTAACCACCTTACCCCGGACGAGGCAAGGAGCTATGCTATGTCTCAGCTCCCACGAGAGCTATCAAAGCACACTGGGTTTGCATTTGACTCACCCGGATACGAGTCCTTCTTTGCCGCACAGCTCGGTGTTTATGCCCCTCAAAAGGCATGGGATGTGGCTCGTAGAGCCAGCATGAAGCCCCGCACCACGAAACTAGGTCAACAGAGTTAG 3660 41.28 MKTVRLGDRKSRLSSGSVSSRPIQLGRVQPQAPGHRTIFCNDREANLPVKFKGNSVSTTKYNFFTFLPKGLFEQFRRVANLYFLTISILSATPISPVHPITNVIPLSIVLLVSLIKEAFEDWKRFQNDMAINNNSVKVLQDQKWETIPWKKLQVGDIVKVKQDGYFPADLLFLASTNSDGVCYIETANLDGETNLKIRKALEKTWDYLIPDKASEFKGEVQCEQPNNSLYTFTGNLIIQKQTLPLSPNQLLLRGCSLRNTEYIVGAVIFTGHETKVMMNTMNVPSKRSTLERKLDKLILALFGTLFVMCLIGAIGSGVFINGKYYYLALDRGREDQFNPNNRILVVILTMFTLITLYSTIIPISLYVSIEMIKFIQSTQFINKDLNMFHVESNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEIYGTGITEIERGLYQRNGMKVDEVQKSAGAVQEKGFNFDDSRLTRGAWRNEPHSDLCKEFFRCLAICHTVLPEGNESPEKITYQAASPDEAALVTAAKNFGFFFYRRTPTTIHVSESHVEQMGKTQDVSYEILNVLEFNSTRKRQSVVCRYPDGRLVLYCKGADNVIYERLADGSNELKKATRAHLEQFGSSGLRTLCLAYRDLSSDIYESWNEKFIQAKSSLRDREKKLDEIAELIEKDLILIGCTAIEDKLQEGVPNCIETLCRAGIKIWVLTGDKMETAINIAYACNLINNEMKQFIISSETDAIREVENRGDQVEIARFTREEVKKELKRCLEEAQENLRTASGPKLALVIDGKCLMYALDPSLRVMLLNLSLNCSSVVCCRVSPLQKAQVTSLVRKGARKITLSIGDGANDVSMIQAAHVGVGISGQEGMQAVMASDFAIAQFRFLTDLLLVHGRWSYLRISKVVMYFFYKNLTFTLTQFWFTFHTGFSGQRFYDDWFQSLYNVIFTALPVIIFGLFDKDVSSSLSKKYPELYMEGIRNTFFKWRVVLIWAFFSIYQSLVFYCFVTASSKSSQNSSGKLFGLWDVSTMAFTCIVVAVNLRLLMLCNSITRWHYIGVGGSILAWFIFIFMYSGIMTPQDRQENVYSVIFVLMSTFYFYLTVLLVPIVALLCDFVYQGIQRWFFPYDYQIVQEIHRHEPEGRSMAGLLEISNHLTPDEARSYAMSQLPRELSKHTGFAFDSPGYESFFAAQLGVYAPQKAWDVARRASMKPRTTKLGQQS 1219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5434262 5445048 + Conep12aG0063300.1 Cone12ag0612 449456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0612 1219 FunFam Phospholipid-transporting ATPase 112 281 - -
Cone12ag0612 1219 SFLD C1.7: P-type atpase like 396 897 - -
Cone12ag0612 1219 CDD P-type_ATPase_APLT_Dnf-like 53 1007 - -
Cone12ag0612 1219 FunFam Phospholipid-transporting ATPase 523 678 - -
Cone12ag0612 1219 Pfam Phospholipid-translocating ATPase N-terminal 38 102 IPR032631 -
Cone12ag0612 1219 NCBIfam phospholipid-translocating P-type ATPase 51 1132 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
Cone12ag0612 1219 Pfam E1-E2 ATPase 133 314 - -
Cone12ag0612 1219 Gene3D - 525 679 IPR023299 GO:0000166(InterPro)
Cone12ag0612 1219 NCBIfam HAD-IC family P-type ATPase 819 926 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone12ag0612 1219 SUPERFAMILY Calcium ATPase, transmembrane domain M 50 1124 IPR023298 -
Cone12ag0612 1219 Gene3D - 116 281 - -
Cone12ag0612 1219 Pfam Cation transport ATPase (P-type) 504 607 - -
Cone12ag0612 1219 ProSitePatterns E1-E2 ATPases phosphorylation site. 416 422 IPR018303 -
Cone12ag0612 1219 SUPERFAMILY Calcium ATPase, transduction domain A 133 277 IPR008250 -
Cone12ag0612 1219 PRINTS P-type cation-transporting ATPase superfamily signature 846 865 - -
Cone12ag0612 1219 PRINTS P-type cation-transporting ATPase superfamily signature 414 428 - -
Cone12ag0612 1219 FunFam Phospholipid-transporting ATPase 679 886 - -
Cone12ag0612 1219 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 420 693 IPR023299 GO:0000166(InterPro)
Cone12ag0612 1219 Gene3D - 680 886 IPR023214 -
Cone12ag0612 1219 SFLD p-type atpase 396 897 IPR044492 -
Cone12ag0612 1219 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 26 1137 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0048194(PANTHER)|GO:0140326(PANTHER)
Cone12ag0612 1219 FunFam Phospholipid-transporting ATPase IC 411 423 - -
Cone12ag0612 1219 SUPERFAMILY HAD-like 402 889 IPR036412 -
Cone12ag0612 1219 MobiDBLite consensus disorder prediction 1 22 - -
Cone12ag0612 1219 Coils Coil 761 781 - -
Cone12ag0612 1219 Pfam Phospholipid-translocating P-type ATPase C-terminal 874 1124 IPR032630 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0612 Cone-Chr12:5434262 Cone19ag0872 Cone-Chr19:6833295 0 dispersed
Cone12ag0612 Cone-Chr12:5434262 Cone13ag0997 Cone-Chr13:8392632 0 wgd
Cone12ag0612 Cone-Chr12:5434262 Cone19ag0988 Cone-Chr19:7442544 3.40E-21 wgd
Cone12ag0612 Cone-Chr12:5434262 Cone8ag0629 Cone-Chr8:6217396 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0612 K14802 - csv:101207069 2120.51