Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0617 ATGAAGAGGTCTAGAGACGACGTTTACATGAGCTCACAACTCAAGCGGCCTATGGTCTCATCTCGTGGAGAAGCCTCTGGGAAATCCCAAATGACGGGAGGAGGAAGCACACAAAGACTAACAACAAATGATGCAATATCATATCTTAAGGCGGTAAAGGAAATATTTCAAAACAAGAGGGAGAAATATGATGAGTTCCTTGAGGTCATGAAAGATTTTAAGGCTCAAAGAATTGATACAGCTGGGGTTATAGTGAGGGTGAAGGAATTATTTAAAGGTCACATAGACCTAATTTTGGGCTTCAATGCATTTTTGCCAAAAGGATTTGAGATCACGCTTCCACTCGATGGTGAAAAGCCCCCACAGAAGAAGCCAGTTGAGTTTGATGAAGCTATAAATTTTGTGAATAAGATAAAGACACGGTTTCATGGCAATGATCACATTTACAAATCCTTTTTAGACATTTTGCATATGTATAGAAAAGAGAACAAGTCCATTACCGAGGTCTACCGAGAGGTTTCTTTACTTTTTCAACACAACCATGACCTGCTTGTGGAGTTTACTCATTTCTTACCTGATACTTCAGCCACTGTTTCTGCTCTTTATGCTTCATCCGCTAGGAATTCTATGCCTCATGATAGGAATCCTGCAAGGTCCATGATGCATCAAATGCATTTCGATAAGAAAGAAAGGACTGTGGCTTCACATGCTGACCATGACCTCAGTGTTGATCATCCTGATACAGACCATGATAGAGCGCATATGAAAGTTGACGAAAGACAACTTGGGTGTGTTGAAAGCGAGGAAAGGAGGGAGTGGGTTGATAAAGATTATGAGGAAGGTAGTTATAGGGACTTCAACATGCAAATTTTTTCTCAAAAAAGGAAAGCTGCTCATAGAGTTGAAAACTCAGAAGCTGAACAATCATTTCAAGGTATATATAGCCAAGCATTTGCTTTCTGTGAGAAACTGAAAGGGCAATTACGAAATGCTGATGACTTCCAGGAATTTTACAAGTGCCTCCTTATTTATCAGAAAGAAATTATCACACGATCAGAACTGCTATCTCTGGTGGGTGATCTACTTGGAAGAAATCAGGATCTCTTGGATGGATTCAATGACTTTCTGGCTTGCTGCGATAAGAACGATGGATTTCTTGCTACACTTTTGGGTAAACAATCCTTATGGAATGAAGGAAGGGTAGAGGACAGAGATAAAGATCAGGATCGTCAAAGGGAGGGTAGTGTTGCTAAAGATATAGACCTTGAAATTCGAGAAAGGAACAGATTCGACACAGGGTCTACCTTCGGCAGCAAAGAGGTTGGAGGTCACAAGATGTCCATGTTTCCAAGTAAAGAGAAGTATCTTACTAAGCCTATCAATGAACTTGATCTCTCAAACTGTGAGAGTTGTACGCCCAGTTACCGTCTTCTACCAAATAATTATCCCATACCTTTAGTTAGCCAGAGAACAAGTCTTGGTGACCAAGTCTTAAATGATCATTGGGTTTCTGTCACTTCAGGAAGTGAGGATTACTCCTTTAAGCACATGCGCAAAAACCAATATGAAGAAAGCCTGTTCCGATGTGAAGATGACAGGTTTGAGCTGGATATGTTGTTAGAGTCTGTCAAAGTAACAACCAAGTGTGTTGAAGAACTGTTAGAAAATATCCACAACAATACTTTGAGAATGGACACTCCATTTCACATTGAGGACCATTTCACAGCTCTGAATCTGAGGTGCATCGAACGTTTATATGGTGACCATGGGCTTGATGTAATGGATGTGCTAAGGAGGAATGCACCTCTTTCATTGCCGGTAATCTTGACCCGCCTGAAGCAAAAGCAGGAAGAGTGGGCAAGGTGCCGCTTTGATTTCAATAAAGTGTGGGGTGAAATTTATACAAAAAATTACCATAAATCACTTGATCACCGCAGCTTCTATTTCAAGCAACAAGATGCGAAGAGCTTGAGCACAAAAGCCTTGTTGGCTGAAATTAAAGAAATTACTGAGAAGAAGCGCAAGGAAGATGATCTGCTGCCTTCTATTGCTGCTGGAAATAGACGACCTAATATTCCAAATATGGAATTTGTCTACCCTGATCCAGATATTCATGAAGATATTTACCAGATCATCAAATATTCTTGTGGAGAGGTTTGCACAACTGAACAGTTGGATAAAGTCATGAAGATTTGGACAACCTTCCTGGAACCCATGCTTGGTGTTCCTCTCAGGTCTGTTGGTGCTGAAGACACCGAAGATGTAGTTAAGGTAAAGAATTATGCCAGTGAAGGTTGTATTGCCGGTGATGACAATCCTAGCAGTGGTGCAAATGGGTCTAAGCAGCCAAAGACATCCAGAACCAAAGATGAAAGTATACCAGCTGAATCAATTTCTTGCAGGACTTGGCCGGTAAAAGGGGAATATGGAATTAAAGAAAATGGTTTGCATGATGGTGATGGTATTTTCCCCAAGGGTAATGCTTTCTGCAATACATCTCATCACGGTAAAGTTCTGATTGATGCATCTATCGCTGATGTATTGTCTGGACTCTGCATACAAGACAACTGTAAAGAACAGTTTACCAATTCAAGCACATTACTTGCTGCTACAGTGCAGCAAAATAATGGGAGAACTAACACAGAAAATGTTTCAGGATTGAGTACTACTTCCAAACCTGGTGGTGTTGTAAAAGGGATTGAGTTGACGTCTTCAGAGGGTTGTGATTCAAGACCAGGAATATCCTCAAGTGGGTTAGTTGCTGAAGGAGCAAAAGTGCAAAAGTGTAGTGAAGAATCTTTTCGACATGCAAAGATAGAAAGAGAAGAGGGGGAGTTATCTCCAAATGGAGATTGTGACGAGGGGAATTCTGCAAATTTTGGAGAAGTTGGTTCAGAGACTTCACATAAAGAAAATACTGCTGTGGTAAGGCAGTATCTCAATTCACATGGAGGGCAAGAAAAAGTATGCTGTGGAGAGGCAGGAAAAGGAGTCAATGATGCTGATGCTGATGATGGAGAGGAAAGTCTTCAGAGGTCATCTGAGGACAGTGATAATGCTTCTGAGAATGTTGATCCTTCTGCAAGTGAGTCTGGTGATGGTGAGGAATGTTCTCATGAAGATCGTGCTGAAGATAGGGACCATGATGAGCATAATAATAAGGCTGAAAGTGAGGGAGAGGATGGCAGGATGGCTGATGCCAATGAAGTTGAAGGAGATGCAACATCTATGCCTCTTTCCGAGCGTTTACTTGTTAATGTGAAGCCTCTTACTAAATATGTCCCACGAGCATTGCACAACAAAGAGAAGGGTTCTCGGGTCTTCTATGGAAACGACTCTTTCTATGTCCTTTTTAGGCTTCATCAAATATTGTACGAGAGAATACAATCCGCAACACGTACTGATCTCTATTCTTCCAGGTTTATGAATGCGCTTTACAGTTTACTAGATGGTTCAGCTGATAATTCAAAATTTGAGGATGATTGCCGAGCTATAATTGGAACACAGTCATACATTTTATTCACATTAGACAAGCTAATTTTCAAACTTGTTAAACTGCTGCGAACAGTTGCCACTGATGAAATGGATAACAAGCTTCTTCAACTAAATGCATATGAGAAGTCAAGAAAACAGAGAAGATTTGTTGATACTGTTTATTACGAGAATGCCCGTGTTCTTCTGCACGATGATAATGTATATCGTATTGAATGTTCTTCTGCACCAACTCGTGTTTCTATTCAGCTTATGGACTATGGGCACGATAAACCTGAAGTGAATGCTGTTTCCATGGACCCTACATTTTTAGCTTATCTCCAGAATGACTATCTTTCTACTTCTAACAAAAAAGACAAGTCTGGGATCTTCTTGAAAAAAAATAAGCGCAAATACGACAGTAATGATGAACTTTCTGCTGCATGCCGTTACATGGAAGGATTTACGATTCTTAATGGTTTGGAGTGTAAGATAGCTTGCAATTCATCAAAGGTCTCATATGTTTTAGATACAGAAGACTCTGTGTTTCATGTAGAAAGCAGAAGGAGAAGTGTATGCAAACTTCGCATGTTACGAAGCCGGGCAAGGCCGCCAAACGGTTGTCCTTGTAAGGCAATGCAGTTCCACAGATTTTTGGCAAAGCATATAGCAATCCCTTGA 4152 40.66 MKRSRDDVYMSSQLKRPMVSSRGEASGKSQMTGGGSTQRLTTNDAISYLKAVKEIFQNKREKYDEFLEVMKDFKAQRIDTAGVIVRVKELFKGHIDLILGFNAFLPKGFEITLPLDGEKPPQKKPVEFDEAINFVNKIKTRFHGNDHIYKSFLDILHMYRKENKSITEVYREVSLLFQHNHDLLVEFTHFLPDTSATVSALYASSARNSMPHDRNPARSMMHQMHFDKKERTVASHADHDLSVDHPDTDHDRAHMKVDERQLGCVESEERREWVDKDYEEGSYRDFNMQIFSQKRKAAHRVENSEAEQSFQGIYSQAFAFCEKLKGQLRNADDFQEFYKCLLIYQKEIITRSELLSLVGDLLGRNQDLLDGFNDFLACCDKNDGFLATLLGKQSLWNEGRVEDRDKDQDRQREGSVAKDIDLEIRERNRFDTGSTFGSKEVGGHKMSMFPSKEKYLTKPINELDLSNCESCTPSYRLLPNNYPIPLVSQRTSLGDQVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVKVTTKCVEELLENIHNNTLRMDTPFHIEDHFTALNLRCIERLYGDHGLDVMDVLRRNAPLSLPVILTRLKQKQEEWARCRFDFNKVWGEIYTKNYHKSLDHRSFYFKQQDAKSLSTKALLAEIKEITEKKRKEDDLLPSIAAGNRRPNIPNMEFVYPDPDIHEDIYQIIKYSCGEVCTTEQLDKVMKIWTTFLEPMLGVPLRSVGAEDTEDVVKVKNYASEGCIAGDDNPSSGANGSKQPKTSRTKDESIPAESISCRTWPVKGEYGIKENGLHDGDGIFPKGNAFCNTSHHGKVLIDASIADVLSGLCIQDNCKEQFTNSSTLLAATVQQNNGRTNTENVSGLSTTSKPGGVVKGIELTSSEGCDSRPGISSSGLVAEGAKVQKCSEESFRHAKIEREEGELSPNGDCDEGNSANFGEVGSETSHKENTAVVRQYLNSHGGQEKVCCGEAGKGVNDADADDGEESLQRSSEDSDNASENVDPSASESGDGEECSHEDRAEDRDHDEHNNKAESEGEDGRMADANEVEGDATSMPLSERLLVNVKPLTKYVPRALHNKEKGSRVFYGNDSFYVLFRLHQILYERIQSATRTDLYSSRFMNALYSLLDGSADNSKFEDDCRAIIGTQSYILFTLDKLIFKLVKLLRTVATDEMDNKLLQLNAYEKSRKQRRFVDTVYYENARVLLHDDNVYRIECSSAPTRVSIQLMDYGHDKPEVNAVSMDPTFLAYLQNDYLSTSNKKDKSGIFLKKNKRKYDSNDELSAACRYMEGFTILNGLECKIACNSSKVSYVLDTEDSVFHVESRRRSVCKLRMLRSRARPPNGCPCKAMQFHRFLAKHIAIP 1383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5512424 5522129 - Conep12aG0063800.1 Cone12ag0617 449461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0617 1383 PANTHER SIN3B-RELATED 36 1348 IPR039774 GO:0000118(PANTHER)|GO:0000122(PANTHER)|GO:0000785(PANTHER)|GO:0003714(InterPro)|GO:0003714(PANTHER)
Cone12ag0617 1383 Pfam Sin3 family co-repressor 470 560 IPR013194 -
Cone12ag0617 1383 MobiDBLite consensus disorder prediction 1032 1065 - -
Cone12ag0617 1383 ProSiteProfiles PAH domain profile. 124 194 IPR003822 GO:0006355(InterPro)
Cone12ag0617 1383 Pfam Paired amphipathic helix repeat 333 376 IPR003822 GO:0006355(InterPro)
Cone12ag0617 1383 Pfam Paired amphipathic helix repeat 61 105 IPR003822 GO:0006355(InterPro)
Cone12ag0617 1383 Pfam Paired amphipathic helix repeat 147 191 IPR003822 GO:0006355(InterPro)
Cone12ag0617 1383 FunFam Paired amphipathic helix SIN3-like protein 123 194 - -
Cone12ag0617 1383 Gene3D Paired amphipathic helix 44 106 IPR036600 GO:0006355(InterPro)
Cone12ag0617 1383 SUPERFAMILY PAH2 domain 37 107 IPR036600 GO:0006355(InterPro)
Cone12ag0617 1383 SUPERFAMILY PAH2 domain 315 377 IPR036600 GO:0006355(InterPro)
Cone12ag0617 1383 MobiDBLite consensus disorder prediction 939 971 - -
Cone12ag0617 1383 MobiDBLite consensus disorder prediction 991 1065 - -
Cone12ag0617 1383 MobiDBLite consensus disorder prediction 767 794 - -
Cone12ag0617 1383 Gene3D Paired amphipathic helix 311 380 IPR036600 GO:0006355(InterPro)
Cone12ag0617 1383 FunFam Paired amphipathic helix protein SIN3 308 381 - -
Cone12ag0617 1383 Pfam C-terminal domain of Sin3a protein 1138 1338 IPR031693 -
Cone12ag0617 1383 FunFam Paired amphipathic helix protein Sin3 44 106 - -
Cone12ag0617 1383 MobiDBLite consensus disorder prediction 998 1019 - -
Cone12ag0617 1383 ProSiteProfiles PAH domain profile. 38 108 IPR003822 GO:0006355(InterPro)
Cone12ag0617 1383 Gene3D Paired amphipathic helix 122 195 IPR036600 GO:0006355(InterPro)
Cone12ag0617 1383 SMART hdac_interact2seq4b 467 567 IPR013194 -
Cone12ag0617 1383 ProSiteProfiles PAH domain profile. 306 379 IPR003822 GO:0006355(InterPro)
Cone12ag0617 1383 SUPERFAMILY PAH2 domain 120 193 IPR036600 GO:0006355(InterPro)
Cone12ag0617 1383 MobiDBLite consensus disorder prediction 17 39 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0617 K11644 - - mdm:103451905 1797.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0633 Cone-Chr8:6249814 Cone12ag0617 Cone-Chr12:5512424 3.60E-243 transposed
Cone11ag0139 Cone-Chr11:619864 Cone12ag0617 Cone-Chr12:5512424 0 wgd
Cone12ag0617 Cone-Chr12:5512424 Cone13ag1005 Cone-Chr13:8435599 0 wgd
Cone12ag0617 Cone-Chr12:5512424 Cone18ag1341 Cone-Chr18:9267886 0 wgd
Cone12ag0617 Cone-Chr12:5512424 Cone19ag0999 Cone-Chr19:7482066 0 wgd
Cone12ag0617 Cone-Chr12:5512424 Cone8ag0632 Cone-Chr8:6248383 7.22E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g802 . Blo16g01142 . Bda11g01246 Bpe13g01441 Bpe10g00817 . Bma15g00207 Cmo04g01680 . . . . . Sed01g4034 . Cpe01g01419 Bhi07g01656 Tan04g1162 . . . . . Cla05g02504 Cam05g2688 Cec05g2721 Cco05g2756 Clacu05g2691 Cmu05g2545 Cre05g2660 Cone13ag1005 Cone19ag0999 Cone8ag0633 Cone12ag0617 Lsi04g00502 Csa05g02381 Chy10g00946 Cme10g00481 . . Bda07g01576 Bda11g01246 Bpe11g01747 . Bma01g00071 . . . . Cma04g01604 . Car04g01646 . . . . . . . . . . . . . . . . . . Csa05g01727 Chy09g00667 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003861 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 2 2 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44463 PF00928 Adap_comp_sub 7.00E-56 CL0448 Cone TR