Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0621 ATGGCGAGGAACGGTGGCGGTTCGTGGCGACGGAGGGCGGAGAAGATTGAGGATTTCGTCGAACACTTGCCCCCGCCGCTGCTGACGTCTGATTCTGAACAAGTTCATGTTCTTGCTGTTGATGATAGTCTCGTCGATCGAAAGTGCATCGAGCGCTTGCTCAAGATTTCTTCCTGTAAAGTTACCGCCGTAGATAGTGGAAGAAGAGCATTGCAATACCTTGGCTTGGACGGGGATCAGAGAAGCTCCTCTGTTCGATTTGATAAAATGAAGGTCGATATGATCATAACCGATTACTGTATGCCTGGAATGACAGGCTACGAATTGCTCAAGAAAATCAAGGAATCATCGACTTTCAGAGAAATTCCAGTTGTGATTATGTCCTCAGAAAACGTATTAGCAAGAATAAGCAGGTGCTTAGAAAATGGAGCAGAAGATTTCATAGTGAAGCCAGTGCAGTTATCAGATGTGAGAAGGCTCACGGATTATATGATGAGGGAGATTAAAGTAGGAGACGGTGAGGAAAGGAAGATAACGAAGAGAAAGTTCAGGGAAGATTCTGGTTGCGATCTGGCTTCATCATCTCCGTCCATTTCTTCGTCAAGACCATCATCGCCTACTTTTGGAGATTTGGTTGGCAAGATATAG 648 45.37 MARNGGGSWRRRAEKIEDFVEHLPPPLLTSDSEQVHVLAVDDSLVDRKCIERLLKISSCKVTAVDSGRRALQYLGLDGDQRSSSVRFDKMKVDMIITDYCMPGMTGYELLKKIKESSTFREIPVVIMSSENVLARISRCLENGAEDFIVKPVQLSDVRRLTDYMMREIKVGDGEERKITKRKFREDSGCDLASSSPSISSSRPSSPTFGDLVGKI 215
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 5585406 5586871 - Conep12aG0064200.1 Cone12ag0621 449465
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0621 215 MobiDBLite consensus disorder prediction 187 215 - -
Cone12ag0621 215 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 197 IPR045279 GO:0009736(InterPro)
Cone12ag0621 215 SMART REC_2 35 161 IPR001789 GO:0000160(InterPro)
Cone12ag0621 215 CDD REC_typeA_ARR 37 160 - -
Cone12ag0621 215 ProSiteProfiles Response regulatory domain profile. 36 165 IPR001789 GO:0000160(InterPro)
Cone12ag0621 215 MobiDBLite consensus disorder prediction 190 207 - -
Cone12ag0621 215 SUPERFAMILY CheY-like 34 167 IPR011006 -
Cone12ag0621 215 Pfam Response regulator receiver domain 37 158 IPR001789 GO:0000160(InterPro)
Cone12ag0621 215 Gene3D - 35 195 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0621 Cone-Chr12:5585406 Cone13ag0617 Cone-Chr13:6253790 7.14E-55 dispersed
Cone12ag0621 Cone-Chr12:5585406 Cone13ag0113 Cone-Chr13:685989 1.41E-62 wgd
Cone12ag0621 Cone-Chr12:5585406 Cone19ag0116 Cone-Chr19:655317 1.56E-64 wgd
Cone12ag0621 Cone-Chr12:5585406 Cone8ag0639 Cone-Chr8:6286505 4.33E-127 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44464 PF01546 Peptidase_M20 1.10E-27 CL0035 Cone TR
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0621 K14492 - mdm:103451909 251.521