Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0625 ATGAAAATCCTTCTCTTTTCCTATACTCTAATTCTTTCAATCTCTACTTTATCAGCTCCCATCGCAGCTCATTTCTTCTTCCCCAACGCATCCTTCATTCCGCCATGGCCATTGAACTCTAGCAAGAGTGCTTGGGATGAGTTCAACAAACTTGCAGGCTGCCGCGCTGGACAGAAAGTCGACGGTTTATCCAAACTCAAACGCTATTTCAATCGCTTCGGTTACATTCCAAACGCTACTAATCTAGATTTCACAGACGATTTCGACGAGTTGCTGGAATCGGCTATCAAGTCGTATCAGAGAAACTTTAATTTAAACGTTACAGGTGAACTAGACGATTTGACTCTCAAACAGATCGAACGGCCGCGATGCGGTGTGGCTGATATAATCAACGTCTCAACTTCAGTAAACGAGAGGAAAACGATGGAGTATCATCGATCTCAATCTGATCATTTCCATGCAGTTTCTCGCTACACTTTCTTCCCCGGCGAACCACGGTGGCCGGCGAGTAAGCGAGATCTGACCTACGCGTTCTCGCCAGACAACGATCTCTCCGATACGGTGAAGAGCGTTTTCAGAAGCGCCTTCGAACGGTGGTCGGCAGTCACGCCGTTGACCTTCACTGAAACGAGTTCCTACAACACCGCCGACATCGAGATTGCATTCTTCGTCGGCGACCACGGCGACGGAGAACCGTTCGACGGAGTATTAGGGACATTAGCTCACGCTTTCTCGCCGCCGAGTGGTCGGTTCCATTTGGACAACGACGAGATCTGGATCGTCAACGGCGACGTTACGACGTCGTCTCAGGTTGAGGCTGTAGATCTGGAGTCCGTGGCGGTTCATGAGATCGGGCATTTGCTTGGTCTAGGTCACTCTTCTGTAGAGGACTCGATTATGTACCCTACGATCTCGTCGCGTACGAGGAAGATAGAGCTCGCAGAAGACGACATAACCGGAATCCAGGAATTGTACGGCAGCAATCCGAATGGGAATAGTTCCTCATCGACGCCGTCAGCGACGGAGAAAGAAACATCTGATGGTAGGGCCCATATTTTGACTTCGCCCAGGCTTCTTACAGTCCCGTGCTTCATTCATCTTCTTCTCTTGATACTAATGTAG 1122 49.38 MKILLFSYTLILSISTLSAPIAAHFFFPNASFIPPWPLNSSKSAWDEFNKLAGCRAGQKVDGLSKLKRYFNRFGYIPNATNLDFTDDFDELLESAIKSYQRNFNLNVTGELDDLTLKQIERPRCGVADIINVSTSVNERKTMEYHRSQSDHFHAVSRYTFFPGEPRWPASKRDLTYAFSPDNDLSDTVKSVFRSAFERWSAVTPLTFTETSSYNTADIEIAFFVGDHGDGEPFDGVLGTLAHAFSPPSGRFHLDNDEIWIVNGDVTTSSQVEAVDLESVAVHEIGHLLGLGHSSVEDSIMYPTISSRTRKIELAEDDITGIQELYGSNPNGNSSSSTPSATEKETSDGRAHILTSPRLLTVPCFIHLLLLILM 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5621439 5622717 + Conep12aG0064800.1 Cone12ag0625 449469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0625 373 SMART col_5 163 327 IPR006026 GO:0006508(InterPro)|GO:0008237(InterPro)|GO:0008270(InterPro)
Cone12ag0625 373 Pfam Putative peptidoglycan binding domain 63 118 IPR002477 -
Cone12ag0625 373 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 160 330 - -
Cone12ag0625 373 PRINTS Matrixin signature 192 207 IPR021190 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cone12ag0625 373 PRINTS Matrixin signature 119 132 IPR021190 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cone12ag0625 373 PRINTS Matrixin signature 216 244 IPR021190 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cone12ag0625 373 PRINTS Matrixin signature 279 304 IPR021190 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cone12ag0625 373 PRINTS Matrixin signature 313 326 IPR021190 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Cone12ag0625 373 MobiDBLite consensus disorder prediction 324 343 - -
Cone12ag0625 373 Pfam Matrixin 167 326 IPR001818 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)|GO:0031012(InterPro)
Cone12ag0625 373 Gene3D Collagenase (Catalytic Domain) 51 332 IPR024079 GO:0008237(InterPro)
Cone12ag0625 373 PANTHER MATRIX METALLOPROTEINASE 23 339 - GO:0004222(PANTHER)|GO:0030198(PANTHER)|GO:0030574(PANTHER)
Cone12ag0625 373 CDD ZnMc_MMP 166 325 IPR033739 GO:0008237(InterPro)|GO:0008270(InterPro)
Cone12ag0625 373 FunFam Metalloendoproteinase 1 53 331 - -
Cone12ag0625 373 MobiDBLite consensus disorder prediction 324 348 - -
Cone12ag0625 373 SUPERFAMILY PGBD-like 55 129 IPR036365 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0625 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0388 Cone-Chr12:2238580 Cone12ag0625 Cone-Chr12:5621439 1.62E-84 dispersed
Cone12ag0625 Cone-Chr12:5621439 Cone2ag0160 Cone-Chr2:836434 2.06E-87 dispersed
Cone12ag0625 Cone-Chr12:5621439 Cone8ag0404 Cone-Chr8:2487659 3.73E-86 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g791 . . Bda01g02239 Bda11g01250 Bpe13g00477 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0625 . . . . . . . Bda11g01250 . . Bma01g00069 Bma06g00637 . Cmo04g02859 . . . . . Cpe13g00923 . . . . . . . . . . . . . . . . Csa05g01725 Chy09g00664 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006919 2 1 0 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 1 36