Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0627 ATGTCGGTCTCCTGCTCCGACCTACTTTGCGACGAGGACTCATCCGGAATCTTTCCCGGAGAGTCGCCGGAATGCTCTTCTGACCTCGACTCTACAGAAGCTCCCATAGAGGATTCGATTATCGCTTTCATTGAAGAGGAAGAGCACTTCGTTCCTGGTTCCGATTATTTGTCGCGCTTTCAGTCTCGAGATCTGGATGAGTCTGCTAGAGCAGAATCTGTTGCATGGATTCTCAAGGTTCATGTTTACTGTGGATTTCATCCACTGACTGCATATCTCTCCATTAACTACTTGGATCGGTTCCTTTACTCCCGCCGTCTGCCGCAAACAAATGGGTGGCCCTTGCAACTCCTCTCGGTTGCTTGCTTATCACTAGCTGCTAAAATGGAGGAACCTCTGATTCCTTCTTTATTAGATCTTCAGGTTGAAGGAGCCAAATACATATTTGAGCCTAGAACTGTATATCGGATGGAACTTCTTGTGCTTAGAGTTCTGGATTGGCGGCTTCGATCCGTAACACCATTCAGCTTCGTCGAATTCTTTGCAAGAAAGCTCGATTCAACGGGAAAATTTAAGACTTTTCTGATTTCTAGATCAACAGATATTATCCTCTCTAATATCAGAGACACTGTCTTTCTTGAATACTGCCCATCATGCATTGCTGCCTCAGCTTTACTTTGCACAGCAAGTGAAATTCCAATCTTGCCCATTGTAAATCCTGATCATGCTGAATCGTGGTGCATCGGATTAAGAAAAGAAAAGATCAGAAGATGCTATCAACTAATGCAAGAATTTCTGTTAATTAACAAGAGCCAGAAGCCTAAGAATATTTTCCCACAGCTCCGAGTAACAGTTATGCCCTTGATGAGGTTGAGTGACTTGCAGTCTTCCTCATCACCATCACCATCTCTTAAGAGAAGAAAATTAAAATAA 933 43.41 MSVSCSDLLCDEDSSGIFPGESPECSSDLDSTEAPIEDSIIAFIEEEEHFVPGSDYLSRFQSRDLDESARAESVAWILKVHVYCGFHPLTAYLSINYLDRFLYSRRLPQTNGWPLQLLSVACLSLAAKMEEPLIPSLLDLQVEGAKYIFEPRTVYRMELLVLRVLDWRLRSVTPFSFVEFFARKLDSTGKFKTFLISRSTDIILSNIRDTVFLEYCPSCIAASALLCTASEIPILPIVNPDHAESWCIGLRKEKIRRCYQLMQEFLLINKSQKPKNIFPQLRVTVMPLMRLSDLQSSSSPSPSLKRRKLK 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5632982 5636078 - Conep12aG0065000.1 Cone12ag0627 449471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0627 310 SMART cyclin_7 75 163 IPR013763 -
Cone12ag0627 310 Pfam Cyclin, N-terminal domain 42 170 IPR006671 -
Cone12ag0627 310 Gene3D - 53 170 - -
Cone12ag0627 310 Gene3D - 44 259 - -
Cone12ag0627 310 CDD CYCLIN_AtCycD-like_rpt2 172 262 - -
Cone12ag0627 310 SMART Cyclin_C_2 172 303 IPR004367 -
Cone12ag0627 310 FunFam D2/4-type cyclin 53 168 - -
Cone12ag0627 310 SUPERFAMILY Cyclin-like 153 274 IPR036915 -
Cone12ag0627 310 SUPERFAMILY Cyclin-like 34 169 IPR036915 -
Cone12ag0627 310 CDD CYCLIN_AtCycD-like_rpt1 69 167 - -
Cone12ag0627 310 FunFam D6-type cyclin 169 260 - -
Cone12ag0627 310 ProSitePatterns Cyclins signature. 70 101 IPR048258 -
Cone12ag0627 310 PANTHER CYCLINS 32 267 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone12ag0627 310 Pfam Cyclin, C-terminal domain 172 280 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1053 Cone-Chr10:7320857 Cone12ag0627 Cone-Chr12:5632982 3.61E-54 dispersed
Cone12ag0627 Cone-Chr12:5632982 Cone3ag1037 Cone-Chr3:29188468 3.99E-59 dispersed
Cone12ag0627 Cone-Chr12:5632982 Cone13ag1015 Cone-Chr13:8489773 1.70E-141 wgd
Cone12ag0627 Cone-Chr12:5632982 Cone19ag1009 Cone-Chr19:7532746 1.50E-139 wgd
Cone12ag0627 Cone-Chr12:5632982 Cone8ag0642 Cone-Chr8:6340215 4.04E-113 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0627 K18810 - csv:101209417 399.438