Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0628 ATGAACTGTTTGTCGAACCTACCTCTGCATTTTCGAGCGATTTTCGGGAGAGCTAGTTGCCATTTCTCGACGAAGAACTTATTATATGGCTGTTCTGGTCTCTCATGGAGGTCAAGCCTTAAAAATTCTGCCATTGAGGCAGTCATTTTAGATCATTTGGTTTCGAAATTGCGCATTCAGTGTTACTCGTCTCGAAAAGGCAGCAAAGGTAGTTCTCGTTCGCGAAAATTGGATTCTGAAAGCGTAATGGAGCCGCAAGATAAAGATGCTTTTTTTGTTGTGCGAAAAGGAGACATTGTTGGTGTCTATAAGAATTTTACAGATTGTCAAGCTCAGGCTGGATCGTCGATATGTGATCCTCCTGTTAGTGTGTACAAAGGATACTTGTTGACTAAAGATGCGGAGGAATATCTTGTCTCCTCTGGGCTTAAGAATGCTCTCTACACTATTAAAGCTGCAGATTTAAAAACTGATCTATTTGGTTCACTTGTGCCTTGCACCTTTCATGATGAAGCTTCATTGAAAGGAGAAGTGTCTGCCAAGGATGTAACAAAAAGATCACAGGAGGCTCTTCAATCAGAAAATGGAGCAATTGGTTCAACGTCTACTTCAACCGAGCCCTTGAGAAAGCAGGCCAAGTTAGATCATGCCAATGCCGCCCAAGTATCGTCCTCTGATTGTTCCTGTATTCTTGAGTTTGATGGCGCCTCGAAAGGAAATCCAGGACAAGCTGGGGCAGGAGCAGTGCTACGAGCTTCTGATGGGAATGTGATATGTAGACTGCGTGAAGGGTTGGGAATAGCAACGAATAATGTTGCTGAATACAGAGCTATGCTTTTGGGACTGAAATATGCTCTTAAGAAAGGTTTTACTAAGATCCAAGTCCAAGGTGACTCTAAGCTTGTCTGCATGCAGGTTCGAGGATTATGGAAGGTAAAAAACGAGAACATGTCTTATTTATATGACGAAGTAAAGAAGCTGAAGGATGAGTTCACATCATTTGAGATCAGTCATGTTCTAAGGGGCTTAAACTCTGATGCTGATGCTCAAGCAAACTTGGCCGTTAGGCTTGCCGATGGTCAAGTCCAAGAGGAGTGA 1098 42.9 MNCLSNLPLHFRAIFGRASCHFSTKNLLYGCSGLSWRSSLKNSAIEAVILDHLVSKLRIQCYSSRKGSKGSSRSRKLDSESVMEPQDKDAFFVVRKGDIVGVYKNFTDCQAQAGSSICDPPVSVYKGYLLTKDAEEYLVSSGLKNALYTIKAADLKTDLFGSLVPCTFHDEASLKGEVSAKDVTKRSQEALQSENGAIGSTSTSTEPLRKQAKLDHANAAQVSSSDCSCILEFDGASKGNPGQAGAGAVLRASDGNVICRLREGLGIATNNVAEYRAMLLGLKYALKKGFTKIQVQGDSKLVCMQVRGLWKVKNENMSYLYDEVKKLKDEFTSFEISHVLRGLNSDADAQANLAVRLADGQVQEE 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5646784 5651271 + Conep12aG0065100.1 Cone12ag0628 449472

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0628 365 SUPERFAMILY L9 N-domain-like 90 138 IPR009027 -
Cone12ag0628 365 Pfam Reverse transcriptase-like 233 353 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Cone12ag0628 365 FunFam RBR-type E3 ubiquitin transferase 229 358 - -
Cone12ag0628 365 MobiDBLite consensus disorder prediction 190 209 - -
Cone12ag0628 365 PANTHER POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN 180 354 - -
Cone12ag0628 365 SUPERFAMILY Ribonuclease H-like 229 352 IPR012337 -
Cone12ag0628 365 Gene3D - 88 140 IPR037056 -
Cone12ag0628 365 Gene3D - 228 359 IPR036397 GO:0003676(InterPro)
Cone12ag0628 365 CDD RNase_HI_like 229 356 - -
Cone12ag0628 365 ProSiteProfiles RNase H type-1 domain profile. 225 356 IPR002156 GO:0003676(InterPro)|GO:0004523(InterPro)
Cone12ag0628 365 MobiDBLite consensus disorder prediction 190 208 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0628 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0131 Cone-Chr11:593158 Cone12ag0628 Cone-Chr12:5646784 1.77E-102 wgd
Cone12ag0628 Cone-Chr12:5646784 Cone18ag1350 Cone-Chr18:9296925 3.41E-13 wgd
Cone12ag0628 Cone-Chr12:5646784 Cone8ag0643 Cone-Chr8:6364683 1.19E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g776 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0643 Cone12ag0628 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001706 2 4 1 4 3 2 2 2 2 2 1 2 2 2 2 2 2 2 2 2 2 3 2 2 1 2 1 10 2 2 70