Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0631 ATGTTTACAGAAGTTGCTAAATACGGGACCACTGCTGCTGCCGTTGAAGATCCGATCAATCCCTCTGTCAAAGTAAATCATACTCAGCTTTTGATTAATGGACAGTTCGTGGATGCAGTCTCAGGGAAAACTTTTCCAACATTGGACCCAAGGACTGGGGAAGTCATTGCTCACGTGTCTGAGGGCGATGCTGAAGATATCAATAGAGCAGTTTCCTCTGCTCGAAAGGCATTTGATGAAGGACCATGGCCTAAGATGACTGCATATGAAAGATGCCGGATACTTTTGCACTTTGCTGATTTGCTTGAAAAGCATAATGACGAACTTGCAGCCCTTGAAACTTGGGATAATGGGAAGCCATATGAACAGGCCGCTAAGATTGAAGTACCGATGGTTGTTCGTATTTTCCGATATTATGCTGGTTGGGCGGATAAGATTCATGGTTTAACCGTTCCGGCTGATGGACCATATCATGTTCAAATCCTACATGAGCCGATAGGAGTTGCAGGTCAGATTATTCCATGGAATTTTCCTCTCCTCATATTAGCTTGGAAGGTTGCACCGGCATTAACATGTGGGAACACTGTTGTACTAAAGACAGCCGAGCAGACACCATTGTCAGCTCTTTATGCAGCAAAATTACTTCATGAGGCCGGACTTCCCAATGGCGTTTTGAATATCGTTTCTGGTTTTGGACCAACTGCGGGTGCTTCTCTTTGCAGTCATATGGATGTTGATAAGCTTGCATTTACTGGATCCACCGTTACTGGTAAGGTTGTCCTTGAATTGGCAGCGAGAAGCAATCTTAAACCAGTAACTTTGGAGCTTGGGGGAAAATCCCCTTTCATTGTATGTGAAGATGCTGATGTAGATAAGGCTGTTGAACTGGCACACTCTGCTCTATTTTTCAACCAGGGACAATGCTGCTGTGCTGGTTCCCGTACTTTCGTACACGAACGAGTATATGATCAGTTTGTGGAGAAAGCAAAGGAACGTGCATTAAAACGTGTTGTAGGAGATCCATTTAAGGAGGGTATTGAACAGGGTCCTCAGATTGATTCGGAACAACTTGAGAAGGTCCTAAAATACATAAGATCTGGGGTTGAAAGTGGAGCCACTCTTGAAACTGGAGGAGAGAGGCTCGGCTCGAAGGGTTACTATATCAAGCCCACTGTTTTCTCAAACGTCCAAGACGACATGTTAATAGCAAAGGATGAGATCTTTGGTCCCGTGCAAACCATTCTGAAATTCAAGGACCTTGAAGATGTAGTAAAAAGGGCAAATGCAACTCAATACGGGCTTGCAGCTGGGGTCTTCACTCAACATATCGATACTGCTAACTACCTTACCCGAGCATTACGGGCTGGAACGGTTTGGGTAAATTGCTATGATGTGTTTGATACCACGATTCCGTTTGGCGGGTTTAAGATGAGTGGGCACGGAAGAGAAAAGGGGATCTATGGCCTCAAGAATTACTTGCAAGTGAAAGCTGTTGTTACTCCTTTGAAAAACCCAGCTTGGCTTTAG 1527 44.6 MFTEVAKYGTTAAAVEDPINPSVKVNHTQLLINGQFVDAVSGKTFPTLDPRTGEVIAHVSEGDAEDINRAVSSARKAFDEGPWPKMTAYERCRILLHFADLLEKHNDELAALETWDNGKPYEQAAKIEVPMVVRIFRYYAGWADKIHGLTVPADGPYHVQILHEPIGVAGQIIPWNFPLLILAWKVAPALTCGNTVVLKTAEQTPLSALYAAKLLHEAGLPNGVLNIVSGFGPTAGASLCSHMDVDKLAFTGSTVTGKVVLELAARSNLKPVTLELGGKSPFIVCEDADVDKAVELAHSALFFNQGQCCCAGSRTFVHERVYDQFVEKAKERALKRVVGDPFKEGIEQGPQIDSEQLEKVLKYIRSGVESGATLETGGERLGSKGYYIKPTVFSNVQDDMLIAKDEIFGPVQTILKFKDLEDVVKRANATQYGLAAGVFTQHIDTANYLTRALRAGTVWVNCYDVFDTTIPFGGFKMSGHGREKGIYGLKNYLQVKAVVTPLKNPAWL 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5686090 5690776 - Conep12aG0065400.1 Cone12ag0631 449475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0631 508 SUPERFAMILY ALDH-like 24 502 IPR016161 GO:0016491(InterPro)
Cone12ag0631 508 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 302 313 IPR016160 GO:0016491(InterPro)
Cone12ag0631 508 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 278 467 IPR016163 GO:0016620(InterPro)
Cone12ag0631 508 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 274 281 IPR029510 GO:0016491(InterPro)
Cone12ag0631 508 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 23 500 - GO:0004029(PANTHER)
Cone12ag0631 508 CDD ALDH_F2BC 25 500 - -
Cone12ag0631 508 FunFam Aldehyde dehydrogenase, putative 470 496 - -
Cone12ag0631 508 FunFam Mitochondrial aldehyde dehydrogenase 2 280 469 - -
Cone12ag0631 508 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 32 285 - -
Cone12ag0631 508 Pfam Aldehyde dehydrogenase family 37 498 IPR015590 GO:0016491(InterPro)
Cone12ag0631 508 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 32 496 IPR016162 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0631 Cone-Chr12:5686090 Cone13ag0133 Cone-Chr13:765770 7.81e-313 dispersed
Cone12ag0631 Cone-Chr12:5686090 Cone13ag0118 Cone-Chr13:701650 4.73E-121 wgd
Cone12ag0631 Cone-Chr12:5686090 Cone19ag0120 Cone-Chr19:669549 1.06E-116 wgd
Cone12ag0631 Cone-Chr12:5686090 Cone8ag0655 Cone-Chr8:6514282 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0631 K00128 - rcu:8282568 888.256