Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0633 ATGGAATCGATCATCAATACCTTAACGGGAGGAACGCGATTGAGGGACATGATTCGGGCTATACGTGCTTGCAAAACTGCAGCACAGGAACGTGCTGTTGTAAGAAAAGAGTGTGCTTCCATTCGTTCTGCATTTAGTGATAACGATCAAGATTATAGGCATCGGAATCTTGCTAAGCTTATGTTTATTCATATGCTTGGTTACCCCACACACTTCGGCCAAATGGAATGCTTGAAGTTGATTGCATCCGCTGGTTTTCCAGAGAAGAGAATTGGGTATCTTGGCCTCATGCTACTTCTTGATGAAAGACAAGAGGTTCTGATGCTGGTCACTAACTCATTAAAACAAGATCTCAATCACTCAAACCAGTATATCGTGGGACTTGCTCTTTGTGCTTTGGGAAATATTTGTTCTGCAGAAATGGCTCGTGATCTTGCACCTGAAGTAGAAAGACTTTTGAAATTTCGAGATCCCAATATAAGGAAAAAAGCGGCATTATCTTCTATTAGGATAATAAGAAAGGTCCCAGATCTGGCAGAAAATTTTGTAAATACTGCAGCATCGTTACTGAAGGAAAAACATCATGGGGTTTTAATAACTGGAATTCAGCTTTGTATAGATCTGTGTAAAGTCAGTGCTGAAGCCCTCAAATATTTTAGAAAGAAGTGCACAGAGGGTTTGGTCAAGACACTAAAGGATGTGGTCAACAGTCCATATATGCCAGAGTATGACATTGCTGGCATCATGGACCCCTTTCTCCATATCCGATTGCTCAAGCTCTTGCAAGTGTTGGGGCAAGGAGATGCAGATGCTAGTGATTATATGAATGATATACTTGCGCAGGTGGCAACAAAAACAGAATCAAACAAGAATGCAGGGAATGCCATTCTTTATCAATGTGTCGAAACTATCATGAGCATCGAAGATAGCGGCGGCTTACATGTTCTTGCTATTAATATCTTAGGAAGATTTTTGTCCAACCGTGACAATAATATCAGATATGTTGCATTGAACATGCTCATGAAGGCTATTACAGTAGATGCTCAAGCAGTGCAGAGGCATCGGACGACGATTTTGGAATGTGTAAAGGATTCAGATGCTTCAATTCAGAAAAAGGCCCTTGAACTTGTTTGTCTTCTAGTAAATGAGAGCAATGTGAAGCCTCTAGTAAAAGAGTTACTTGAATATTTGGAAATAAGTGATCAAGATTTCAAGGGAGATCTTACAGAGAAAATTTGCTCCATTGTTGCAAAGTACTCCTCAGAAAAGATTTGGTATATTGATCAAATGCTCAATGTTCTCACTGAGGCAGGAAATTTTGTCAAAGATGAGATATGGCATGTCCTTATTGTCCTGATAAGCAATGCTTCTGATCTTCATGGATACACTGTACGTGCATTATACAGAGCATTCCATATATCAGCTGAACAGGAGGGGCTTGTTCGTGTTGCAGTTTGGTGCATTGGAGAATATGGTGACATGTTGGTAAAAAATATCGGAATGCTCGATATAGAGGATCCAGTGACAGTTACAGAGTCCGATGCTGTGGACGTCATAGAAACTGTTATAAAGCACCATACCTCTGATCTCACAACCAAAGCAATGTCGCTGATTGCTCTGCTAAAACTCTCTTCCCGTTTTCCACCCTGTTCAGAGAGGATAAAAGATATAATTATTCAATACAGAGGTAGCTTCGTCCTTGAACTGCAACAAAGATCCGTTGAATTCAATTCCATCATCACGAAACATCAAAAAATTAGGTCAGCATTGGTCGAGAGGATGCCAGTTCTGGATGAGGCGTACATTGCAAGGAAGAATGATTCACCTCTCAGTGGACCTTCAATTAATCTTCCAAATGGAGTGGCAAAACCTACTTCTGCTCCTCTAGCAGATTTACTTGATCTAAGTTCAGATGATGTCCCAGCACCTAGCTCCTCCGGTCATGATTTTCTCCAGGACCTCCTTGGAGTTGATATCTCACCAGTTTCAAATCAGACTGGTATCAATCAAACTCAAAAAAGCGGAACTGATGTTCTACTCGATCTTTTGTCTATTGGAACACCTCCTGCGCCAAGCAGCCCATCTTCTACAACTGGAAACAATACACATGTGGCACCCTTAGAGGGACTCTCATCTCTTTCTTCACTTACTGAAGGGACCAATTCTCCTGCCTGTCCTCCGGCAAAGGATTTGTTGTTGGATAGCTCTGCCCCTTTGCCGAAAAACCCTGAAAACAATGGTACTGTTTATCCTTCTATAGTCGCATTTGAGAGCATTTTGTTGAGGATAACATTCAACTTCTCAAAGCTACCTGGAAACCCGCAAACAACATTGATTGATGCTACTTTTACAAACTTGTCACCTAATGCATATACAGAGTTCATCTTCCAGGCTGCCGTTCCGAAATTTCTTCAACTGCAATTGGATCCAGCTAGCAACAATACTCTACCTGGGGGTGGTAATGGGTGCATCACACAAACCTTGAGAGTAATTAACAGTCAACATGGAAAGAAAGCCCTTGTCATGCGTATACGGATAAGTTACAAGATCAACGGCAAAGATGTTTTAGAGGAAGGCCAAGTCAACAACTTCCCTCGTAATCTCTGA 2607 41.35 MESIINTLTGGTRLRDMIRAIRACKTAAQERAVVRKECASIRSAFSDNDQDYRHRNLAKLMFIHMLGYPTHFGQMECLKLIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHSNQYIVGLALCALGNICSAEMARDLAPEVERLLKFRDPNIRKKAALSSIRIIRKVPDLAENFVNTAASLLKEKHHGVLITGIQLCIDLCKVSAEALKYFRKKCTEGLVKTLKDVVNSPYMPEYDIAGIMDPFLHIRLLKLLQVLGQGDADASDYMNDILAQVATKTESNKNAGNAILYQCVETIMSIEDSGGLHVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRTTILECVKDSDASIQKKALELVCLLVNESNVKPLVKELLEYLEISDQDFKGDLTEKICSIVAKYSSEKIWYIDQMLNVLTEAGNFVKDEIWHVLIVLISNASDLHGYTVRALYRAFHISAEQEGLVRVAVWCIGEYGDMLVKNIGMLDIEDPVTVTESDAVDVIETVIKHHTSDLTTKAMSLIALLKLSSRFPPCSERIKDIIIQYRGSFVLELQQRSVEFNSIITKHQKIRSALVERMPVLDEAYIARKNDSPLSGPSINLPNGVAKPTSAPLADLLDLSSDDVPAPSSSGHDFLQDLLGVDISPVSNQTGINQTQKSGTDVLLDLLSIGTPPAPSSPSSTTGNNTHVAPLEGLSSLSSLTEGTNSPACPPAKDLLLDSSAPLPKNPENNGTVYPSIVAFESILLRITFNFSKLPGNPQTTLIDATFTNLSPNAYTEFIFQAAVPKFLQLQLDPASNNTLPGGGNGCITQTLRVINSQHGKKALVMRIRISYKINGKDVLEEGQVNNFPRNL 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5709420 5734385 + Conep12aG0065600.1 Cone12ag0633 449477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0633 868 FunFam AP-1 complex subunit gamma 739 868 - -
Cone12ag0633 868 MobiDBLite consensus disorder prediction 684 743 - -
Cone12ag0633 868 Pfam Adaptin N terminal region 30 583 IPR002553 GO:0006886(InterPro)|GO:0016192(InterPro)|GO:0030117(InterPro)
Cone12ag0633 868 Gene3D - 4 598 IPR011989 -
Cone12ag0633 868 MobiDBLite consensus disorder prediction 688 722 - -
Cone12ag0633 868 SUPERFAMILY Clathrin adaptor appendage domain 727 867 IPR013041 -
Cone12ag0633 868 SMART alpha_adaptinc2 745 865 IPR008152 GO:0006886(InterPro)|GO:0016192(InterPro)
Cone12ag0633 868 FunFam AP-1 complex subunit gamma 6 598 - -
Cone12ag0633 868 Pfam Adaptin C-terminal domain 752 865 IPR008152 GO:0006886(InterPro)|GO:0016192(InterPro)
Cone12ag0633 868 Gene3D - 731 867 - -
Cone12ag0633 868 SUPERFAMILY ARM repeat 29 597 IPR016024 -
Cone12ag0633 868 ProSiteProfiles Gamma-adaptin ear (GAE) domain profile. 748 865 IPR008153 -
Cone12ag0633 868 PIRSF AP1_gamma 10 868 IPR017107 GO:0005794(InterPro)|GO:0016192(InterPro)|GO:0030121(InterPro)
Cone12ag0633 868 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 15 856 IPR050840 GO:0006896(PANTHER)|GO:0030121(PANTHER)|GO:0035615(PANTHER)|GO:0140312(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0633 K12391 - - mdm:103402991 1346.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0633 Cone-Chr12:5709420 Cone13ag1027 Cone-Chr13:8552982 0 dispersed
Cone12ag0633 Cone-Chr12:5709420 Cone19ag1018 Cone-Chr19:7599875 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g748 . . . . . . Bma14g01783 Bma15g00193 . . . . . . . . Cpe01g01517 . . . . . . . . . . . . . . Cone13ag1027 Cone19ag1018 . Cone12ag0633 Lsi04g00530 Csa05g02352 Chy10g00919 Cme10g00507 Blo06g00868 Blo11g00903 Bda07g01592 . . . . . . . . Cma04g01713 . Car04g01746 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005001 2 3 2 3 1 1 2 1 1 1 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 41