Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0638 ATGTCGATGTTTCAAGGTAGCCGGAGAGAACACCGGAGGCCGCTTGATCTTGACTGGAACAAGCTGTTGCCCAGTCAAGACGACGACGAGCCTCCACCTACTCTTGTTGTCAAGTCAAATCTCACCACGACTCGGCCATTTTCGTCGTCTGTAATGGATTCCGATCATCGGCGGTCATTGGTAGAGCAATACAGAAGGTGTAAGGATTTTGAGTTGGAGGAGCAAATTCAGAAACGGAAGGCGACGATTGAAGAGATGGCTTTCAGACTGCCTGATAAGGGGGAAAAGCTTTACTTCGGTCTTAAGCTACTTGAGGAAGAAAAGGAACGGCGGCAACTCAGACGGATTGAAATGCAAGCTGAGGGATATGACAAGCCCACAAACTCCAGTACTGATGGTGCCTTGAGGAATGACAATAAGCAAGAGACCATTCAATCTCAAAGTGTCCCAAAATCCTCATTTGCTTCTTATTTATCTCGGAAGATAGATGAAAAGACAGGTGGTAGTACTGTGAGGGCAATTGATAAGGAACCATCAATTTTGGGGCGTTCTGGCCACCAAGAGACAAAATATAATGGGAAGTTATCACCAAAGAGAAGGCATATGGGCAGCTCATCATCTAGACAGCAATCCTTCAAATCCTCTTGGGGCCTTTGTCATCATGAAGAAAAAAATGCTTCTCTAAAAGGTCATCACAAGGGCAGAGCTTCCACAAATTCTCTTTACCATCTCAAAGGGGCCTTGTCCAGGAAGGATAGTCCGCAAGTCCAACATTCTATGGATTCGAGGCCCAGGAAGGGTCCAGCTGTTGTTGATTTGGATGAGGATGAACCCCAGTGTATAGAGGAAACAGAGGACATAGATGAGTGTATAAAGGAGACTACGATCTACTACCCCTCAAGGGATGATCCAGAATTTGTTGAAATTTGTTATGAAGACATAAAGTGCCTTGGTCCGGAGAGCTATTTGACATCAAATATTATGAACTTCTATATACGATATCTACAGCAGCATACATCTCCAACTAATAGGGCAATACATGATTATCACTTTTTCAATACCTACTTTTATCAAAAGCTCCAAAACGCTGTCTCGTACAAGTGTAGGGATAAGGATGAGTTTTTTGTCAAGTTCAGAAGGTGGTGGAAAGGTGTCGATATATTTCAAAAGGCATATATTCTCATTCCAATTCACCAGGATGTTCATTGGAGCTTGGTGATTATTTGTATTCCGGACAAGGAAGACGAATCAGGACCCATTATACTTCATTTAGATTCGTTGGCATTTCACTCCAGCAGATCTATTTTTAGTGAGATTAAAAGAAGAATGGCGCTATTTGGATAA 1344 42.86 MSMFQGSRREHRRPLDLDWNKLLPSQDDDEPPPTLVVKSNLTTTRPFSSSVMDSDHRRSLVEQYRRCKDFELEEQIQKRKATIEEMAFRLPDKGEKLYFGLKLLEEEKERRQLRRIEMQAEGYDKPTNSSTDGALRNDNKQETIQSQSVPKSSFASYLSRKIDEKTGGSTVRAIDKEPSILGRSGHQETKYNGKLSPKRRHMGSSSSRQQSFKSSWGLCHHEEKNASLKGHHKGRASTNSLYHLKGALSRKDSPQVQHSMDSRPRKGPAVVDLDEDEPQCIEETEDIDECIKETTIYYPSRDDPEFVEICYEDIKCLGPESYLTSNIMNFYIRYLQQHTSPTNRAIHDYHFFNTYFYQKLQNAVSYKCRDKDEFFVKFRRWWKGVDIFQKAYILIPIHQDVHWSLVIICIPDKEDESGPIILHLDSLAFHSSRSIFSEIKRRMALFG 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5779602 5787264 + Conep12aG0066100.1 Cone12ag0638 449482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0638 447 Gene3D Adenoviral Proteinase; Chain A 274 446 - -
Cone12ag0638 447 MobiDBLite consensus disorder prediction 123 151 - -
Cone12ag0638 447 MobiDBLite consensus disorder prediction 1 38 - -
Cone12ag0638 447 ProSiteProfiles Ubiquitin-like protease family profile. 307 447 IPR003653 GO:0006508(InterPro)|GO:0008234(InterPro)
Cone12ag0638 447 MobiDBLite consensus disorder prediction 166 215 - -
Cone12ag0638 447 SUPERFAMILY Cysteine proteinases 299 443 IPR038765 -
Cone12ag0638 447 MobiDBLite consensus disorder prediction 248 271 - -
Cone12ag0638 447 PANTHER UBIQUITIN-LIKE PROTEASE 4-RELATED 56 441 - -
Cone12ag0638 447 Coils Coil 101 121 - -
Cone12ag0638 447 MobiDBLite consensus disorder prediction 118 151 - -
Cone12ag0638 447 MobiDBLite consensus disorder prediction 199 215 - -
Cone12ag0638 447 MobiDBLite consensus disorder prediction 1 25 - -
Cone12ag0638 447 Pfam Ulp1 protease family, C-terminal catalytic domain 322 432 IPR003653 GO:0006508(InterPro)|GO:0008234(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0638 K16287 - - vvi:100241600 372.089
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0638 Cone-Chr12:5779602 Cone8ag0656 Cone-Chr8:6530341 2.42E-229 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g729 . . . . . . . . . Cmo18g00806 . . . Car18g00733 . . . . . . . . . . . . . . . . . . . Cone8ag0656 Cone12ag0638 . . . . . . Bda07g01598 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005400 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 1 3 2 39