Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0639 ATGGATCTTCTCCAGTCATACACAAATCAAGAGGACGAAACCCTAAACCCTAATTCAACCCCTTCCTCACCCGAATATTCCCCTCCTCGCCTCCTCCCTGCCAAATCCGCCGCCCCTAAAGTTGACGACACCATGCTCGCGCTCACCGTCGCGGACTCCAGTCGAAACGTAACCAAACCGATTGATCCAGTCCAGCACGTCGTTGCTTTCAATCCAACCTACGACCAGCTGTGGGCTCCGCTTTATGGCCCTTCTCACCCCTACGCTAAAGACGGAATCGCCCAGGGGATGCGTAACCACAAGCTAGGTTTCGTAGAAGACGCGTCCATTGAACCTTTTGTCTTCGACGAACAGTATAATACTTTCCACAAATATGGCTACGCTGCTGATCCCTCTGCTTCGGCCGGGTACAATTACGTCGGTGATTTTGAGGCTTTGAAGAAAAACGACGCGATTTCTGTTTATAATATTCCTCAGCATGAGCAGAAGAAGAGGAAGATTGAGAAGAAGAAGGAGATGTTGGAGAATGGGGAGGAGGGTGATGTAGTGGAGATGGATCCGGTTGAGGTTGAGAATCCGGCTAGTGATGCATGGTTGATGAAGAACAGGAAGAGTCCTTGGGCAGGGAAGAAGGAAGGGTTGCCTACAGAGTTAACAGAGGAGCAGAAGAAGTATGCAGAAGAGTATGCAAAGAAGAAAGGGGAAGAGAAAGGTGGAGAGAAAGCTGAAACTGTGGCAGATAAGAGTACTTTCCATGGAAAGGAGGAGAGGGATTATCAGGGTAGGTCTTGGATTGCTCCACCTAAGGATGCTAAGGCTTCGAATGATCATTGTTATATACCAAAAAGATTGGTGCATACTTGGAGTGGACACACAAAGGGGGTTTCTGCTATCAGGTTTTTCCCTAAACATGGGCATTTGATTCTCTCTGCTGGAATGGACACTAAGGTGAAGATATGGGATGTGTTTAATTCAGGTAAGTGTATGAGAACTTACATGGGTCATTCTCAAGCTGTTCGGGATATTTCATTTTGTAATGATGGAAGTAAATTCTTAACTGCTGGATATGATAAGAAGATAAAGTATTGGGATACAGAAACTGGGCAAGTCATATCAACCTTTTCAACTGGGAAGATTCCTTATGTGGTTAAGCTTAATCCAGATGATGATAAGCAGAACATTTTATTAGCTGGGATGAGTGATAAAAAGATTGTCCAGTGGGATATGCATACGGGTCAGATCACTCAAGAGTATGATCAACATTTGGGAGCTGTTAATACCATCACCTTTGTGGATAATAATCGGAGATTTGTTACCTCTAGTGATGATAAATCTCTTCGTGTGTGGGAATTTGGAATTCCTGTTGTTATTAAGTATATTAGTGAGCCTCATATGCATTCTATGCCTTCTATTACTCTTCACCCCAATTCAAATTGGCTTGCAGCTCAGAGTTTAGATAATCAGATACTTATTTATAGTACTAGGGAGAGATTCCAGCTCAATAAGAAAAAAAGGTTTGCCGGTCATATTGTGGCAGGGTATGCTTGTCAGGTTAATTTTTCGCCAGATGGGCGATTTGTTATGTCTGGTGATGGTGAGGGAAAGTGCTGGTTTTGGGATTGGAAGACTTGCAAAGTGTTCAGAACTCTTAAGTGTCATGAGGGTGTATGCATTGGGTGTGAGTGGCACCCGTTGGAACAAAGTAAAGTAGCAACTTGTGGGTGGGATGGCTTGATTAAGTATTGGGACTAG 1752 44.12 MDLLQSYTNQEDETLNPNSTPSSPEYSPPRLLPAKSAAPKVDDTMLALTVADSSRNVTKPIDPVQHVVAFNPTYDQLWAPLYGPSHPYAKDGIAQGMRNHKLGFVEDASIEPFVFDEQYNTFHKYGYAADPSASAGYNYVGDFEALKKNDAISVYNIPQHEQKKRKIEKKKEMLENGEEGDVVEMDPVEVENPASDAWLMKNRKSPWAGKKEGLPTELTEEQKKYAEEYAKKKGEEKGGEKAETVADKSTFHGKEERDYQGRSWIAPPKDAKASNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSQAVRDISFCNDGSKFLTAGYDKKIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMHTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSITLHPNSNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKTCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5793465 5797027 + Conep12aG0066200.1 Cone12ag0639 449483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0639 583 MobiDBLite consensus disorder prediction 1 21 - -
Cone12ag0639 583 PANTHER PRE-MRNA-PROCESSING FACTOR 17 1 583 IPR032847 GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0003729(PANTHER)|GO:0071013(PANTHER)|GO:0071013(InterPro)
Cone12ag0639 583 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 332 369 - -
Cone12ag0639 583 Gene3D - 268 583 IPR015943 GO:0005515(InterPro)
Cone12ag0639 583 ProSiteProfiles Trp-Asp (WD) repeats profile. 418 450 IPR001680 GO:0005515(InterPro)
Cone12ag0639 583 FunFam Pre-mRNA-processing factor 17, putative 268 583 - -
Cone12ag0639 583 ProSiteProfiles Trp-Asp (WD) repeats profile. 550 583 IPR001680 GO:0005515(InterPro)
Cone12ag0639 583 CDD WD40 284 583 - -
Cone12ag0639 583 ProSitePatterns Trp-Asp (WD) repeats signature. 308 322 IPR019775 -
Cone12ag0639 583 PRINTS G protein beta WD-40 repeat signature 351 365 IPR020472 -
Cone12ag0639 583 PRINTS G protein beta WD-40 repeat signature 308 322 IPR020472 -
Cone12ag0639 583 PRINTS G protein beta WD-40 repeat signature 437 451 IPR020472 -
Cone12ag0639 583 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 550 583 - -
Cone12ag0639 583 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 418 450 - -
Cone12ag0639 583 ProSiteProfiles Trp-Asp (WD) repeats profile. 332 373 IPR001680 GO:0005515(InterPro)
Cone12ag0639 583 SUPERFAMILY WD40 repeat-like 279 583 IPR036322 GO:0005515(InterPro)
Cone12ag0639 583 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 288 322 - -
Cone12ag0639 583 SMART WD40_4 281 321 IPR001680 GO:0005515(InterPro)
Cone12ag0639 583 SMART WD40_4 454 493 IPR001680 GO:0005515(InterPro)
Cone12ag0639 583 SMART WD40_4 411 450 IPR001680 GO:0005515(InterPro)
Cone12ag0639 583 SMART WD40_4 499 540 IPR001680 GO:0005515(InterPro)
Cone12ag0639 583 SMART WD40_4 367 408 IPR001680 GO:0005515(InterPro)
Cone12ag0639 583 SMART WD40_4 325 364 IPR001680 GO:0005515(InterPro)
Cone12ag0639 583 SMART WD40_4 543 583 IPR001680 GO:0005515(InterPro)
Cone12ag0639 583 ProSiteProfiles Trp-Asp (WD) repeats profile. 288 322 IPR001680 GO:0005515(InterPro)
Cone12ag0639 583 Pfam WD domain, G-beta repeat 546 583 IPR001680 GO:0005515(InterPro)
Cone12ag0639 583 Pfam WD domain, G-beta repeat 283 321 IPR001680 GO:0005515(InterPro)
Cone12ag0639 583 Pfam WD domain, G-beta repeat 413 449 IPR001680 GO:0005515(InterPro)
Cone12ag0639 583 Pfam WD domain, G-beta repeat 504 540 IPR001680 GO:0005515(InterPro)
Cone12ag0639 583 Pfam WD domain, G-beta repeat 326 364 IPR001680 GO:0005515(InterPro)
Cone12ag0639 583 Coils Coil 157 180 - -
Cone12ag0639 583 MobiDBLite consensus disorder prediction 1 35 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0639 K12816 - - csv:101214854 1084.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0639 Cone-Chr12:5793465 Cone14ag0178 Cone-Chr14:830425 5.68E-08 dispersed
Cone12ag0639 Cone-Chr12:5793465 Cone15ag0188 Cone-Chr15:890436 4.30E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g723 . . . . . Bpe10g00836 Bma14g01790 Bma15g00188 . Cmo18g00805 . . . Car18g00732 Sed06g1635 Cpe09g00502 Cpe01g01528 Bhi07g01722 Tan04g1228 Cmetu10g1166 . Hepe10g1644 . . Cla05g02538 Cam05g2728 Cec05g2758 Cco05g2799 Clacu05g2729 Cmu05g2582 Cre05g2696 . . . Cone12ag0639 Lsi04g00546 Csa05g02340 Chy10g00907 Cme10g00519 Blo06g00874 Blo11g00912 Bda07g01599 . . . . . . . . Cma04g01729 . Car04g01761 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004325 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 2 1 42