Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0640 ATGCAAAAACCAGTCTTCCTTGTGATCTCTCTCTTCCTAATTTGCGTTTCATCTCTCAATGTTGCTTCCGCCGTCTCCGAGAAATCACCGGCCGGAGAAAACCCCTTCACCCCAAAAGCATATCTCAACCGCTACTGGGACAAAGAGATCCGAAACGCTAATCCCAAACCGAGCTTTTTGCTCTCCAAGGCATCCCCTTTAAGCGCAGTAGATTCAGCGAGTTTCGCCAAACTTGCGTCTCAAAACGCTCTTTCCACGCGTTTACCAAATTTTTGCTCAGCCGCTGAACTCCTCTGCTTTCCAGATTTATCTCCCAGCATGGAGAAGCACGGGAAGGACTCTAACTTCGCTATATATACCAACCGAAACTTCACTAACTACGGAACGGGTCGACTCGGTGGACTCGACTCGTTTAAGAACTACTCCGACGACCAGAATGTCGCCGGCGATACGTTCCGTCGCTACAGCCGTGACTCCACCGGACACAACGACCTGTTCACGAGCTACTCCGACGGCACTAACGTCGGCGACGAGAACTTCAACACCTACGGCGCGGGAACTACCGGCGGAAAAAGCACATTCACGACGTACGCTGATGATATTAATGTTCCGGATCTCCGATTCACTTCCTACTCCGACGATTCGAACGGTAGGGATCAGACCTTCACCGCTTACAGCAATAAAGGAAATTCCGGATCTCAGTCTTTCTCGAACTATGGAAAGAAAGGAAATGGAGCTCCTAACGATTTCACCAACTATGGAACCGACTCTAACGTTATCGGCTCTGATTTTTCTGGCTATGGCGAATCGGCAAATGCGGCGAAGAACACCTTCACAAATTACGCCAATCAAGGTAACAATCCACAGAATACTTTCAAAAACTATGAAGCAGGCGGCAATGGAGCTATAGATACTTTCACAAGTTACAGAGACGATTCGAATGTAGGAGACGATTCGTTCTCGTCTTACGGGAAGAACTCCAACGCTGCGAAGGTCAATTTCGTAAATTACGGCCAGACTGCAAATCCAGGTTCGGACAAGTTCAGTGGATACGGTCAGGCAAGTAAAGATGAAACCGTTGGATTCAAGATCTACGGTGTGAACACAACTTTTACTGATTACGCGAAAAAGGGCGTTACCTTCTCTGGCCTGCCCAATCCGAGCAGCTCTGCCAAGAAGTATAAAACAATGGCGGTCAGTGGCAGTTTGGTAAATAGATGGGTAGAGCCGGGGAAATTCTTTAGAGAATCGATGGTAAAGAAAGGGACAGTCCTGCCAATGCCGGATATCAGAGATAAAATGCCTAAAAGGTCCTTTTTGCCCCGATCGATTTTGTCTAAATTACCGTTCTCCAGCTCCAAAATCACGGAGCTGAAAGAGATCTTCCATGCGAGGGATAACTCGTCAATGGAGAAGATGATTACAGACTCGTTGACCGAGTGCGAGCGCGCGCCGAGCGAAGGCGAGACGAAGCGATGCGTGGGCTCGATCGAGGACATGATCGACTTCTCCACCTCCGTGCTCGGCCGGAACGTGGTGGTGCGGACGACTGAGAACGTCAAGGGGTCAAAGTCAAAGATCATGATCGGGACCGTTAAAGGAATCAACGGTGGGAAAGTGACGAAATCCGTGTCTTGTCATCAGAGCCTGTTCCCTTACTTACTCTACTACTGCCATTCGGTTCCCAAGGTTCGGGTCTACGAAGCGGATCTCTTGGACGCGAATAGTAAGTCCAAGATCAATCACGGGGTGGCCATCTGTCACATTGACACGTCAGCTTGGAGTCCAACCCATGGAGCTTTTCTGGCCTTGGGGTCGAGTCCGGGTCGGATCGAGGTTTGCCACTGGATATTCGAGAATGATATGACCTGGACAATTGCTGATTGA 1887 49.34 MQKPVFLVISLFLICVSSLNVASAVSEKSPAGENPFTPKAYLNRYWDKEIRNANPKPSFLLSKASPLSAVDSASFAKLASQNALSTRLPNFCSAAELLCFPDLSPSMEKHGKDSNFAIYTNRNFTNYGTGRLGGLDSFKNYSDDQNVAGDTFRRYSRDSTGHNDLFTSYSDGTNVGDENFNTYGAGTTGGKSTFTTYADDINVPDLRFTSYSDDSNGRDQTFTAYSNKGNSGSQSFSNYGKKGNGAPNDFTNYGTDSNVIGSDFSGYGESANAAKNTFTNYANQGNNPQNTFKNYEAGGNGAIDTFTSYRDDSNVGDDSFSSYGKNSNAAKVNFVNYGQTANPGSDKFSGYGQASKDETVGFKIYGVNTTFTDYAKKGVTFSGLPNPSSSAKKYKTMAVSGSLVNRWVEPGKFFRESMVKKGTVLPMPDIRDKMPKRSFLPRSILSKLPFSSSKITELKEIFHARDNSSMEKMITDSLTECERAPSEGETKRCVGSIEDMIDFSTSVLGRNVVVRTTENVKGSKSKIMIGTVKGINGGKVTKSVSCHQSLFPYLLYYCHSVPKVRVYEADLLDANSKSKINHGVAICHIDTSAWSPTHGAFLALGSSPGRIEVCHWIFENDMTWTIAD 628
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5838910 5841244 - Conep12aG0066300.1 Cone12ag0640 449484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0640 628 SMART BURP_2 411 627 IPR004873 -
Cone12ag0640 628 ProSiteProfiles BURP domain profile. 413 627 IPR004873 -
Cone12ag0640 628 Pfam BURP domain 413 625 IPR004873 -
Cone12ag0640 628 PANTHER POLYGALACTURONASE 1 BETA-LIKE PROTEIN 2 29 628 IPR051897 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0640 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0640 Cone-Chr12:5838910 Cone4ag1540 Cone-Chr4:11886417 2.80E-38 dispersed
Cone12ag0640 Cone-Chr12:5838910 Cone13ag0134 Cone-Chr13:774562 1.52E-129 wgd
Cone12ag0640 Cone-Chr12:5838910 Cone8ag0660 Cone-Chr8:6571049 2.95E-243 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g715 . Blo16g01158 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0640 . . . . . . . . . . . Bma06g00623 . . . . Cma05g00009 . Car05g00007 . Cpe07g00689 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005778 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 3 38