Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0641 ATGGAAGAATCAAAATCTGCCCTGAGGAAGCCAGTTTTCACCAAAGTTGACCAGCTTCGCCCAGGCACTACTGGTCACACCCTTACAGTAAAAGTTGTAAGTAGTAAGATGATATTGCAGAAGGGTCGTTCAGATGGTCCTCAAGCCCGTCATATGAGAATTTCTGAATGCTTAGTAGGTGATGAGACTGGATTGATTGTCTTCACAGCTAGAAATGACCAAGTGGATTTGATGAAAGAGGGCACAACTGTTATCCTACGAAATGCCAAGATTGATATGTTCAAAGGATCAATGAGGCTTGGTGTGGATAAATGGGGACGAGTTGAAGTCACTGAGCCAGCCAGTTTTACCGTGAAGGAAGATAACAATCTGTCACTCATAGAGTATGAACTCGTTAATGTTGTTGAAGAGTAA 414 42.51 MEESKSALRKPVFTKVDQLRPGTTGHTLTVKVVSSKMILQKGRSDGPQARHMRISECLVGDETGLIVFTARNDQVDLMKEGTTVILRNAKIDMFKGSMRLGVDKWGRVEVTEPASFTVKEDNNLSLIEYELVNVVEE 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5862591 5865681 - Conep12aG0066400.1 Cone12ag0641 449485

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0641 137 CDD SoSSB_OBF 27 110 - -
Cone12ag0641 137 SUPERFAMILY Nucleic acid-binding proteins 3 134 IPR012340 -
Cone12ag0641 137 Gene3D - 23 126 IPR012340 -
Cone12ag0641 137 Pfam Single-stranded DNA binding protein Ssb-like, OB fold 19 110 IPR048970 -
Cone12ag0641 137 PANTHER OS05G0244600 PROTEIN 4 137 - -
Cone12ag0641 137 FunFam Uncharacterized protein At4g28440 23 126 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0641 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0641 Cone-Chr12:5862591 Cone6ag0171 Cone-Chr6:828888 2.81E-70 dispersed
Cone12ag0641 Cone-Chr12:5862591 Cone13ag1037 Cone-Chr13:8607822 8.47E-82 wgd
Cone12ag0641 Cone-Chr12:5862591 Cone19ag1028 Cone-Chr19:7659869 1.07E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g714 . . . Bda11g01264 . Bpe10g00838 Bma14g01791 Bma15g00186 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1037 Cone19ag1028 . Cone12ag0641 . . . . Blo06g00876 Blo11g00914 Bda07g01600 Bda11g01264 . . Bma01g00050 . . . . . Cma05g00010 . Car05g00008 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001754 3 2 1 3 1 1 3 2 1 2 1 2 3 2 2 3 2 7 3 2 2 2 2 2 2 1 2 2 2 4 67