Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0643 ATGAGTGGTCAAAGACTTCGTATCACAATTCAAACTGTTTCCCAATCCTCCCCATCATCTATAATTTCTTGCATAGAGTGCTTACCAAATGATGCTCAAGTTTCACCTCTTACCTTGGCCAATCTTTCTGAGCATGGGGACTTGAAGTCTTCGAATGAGCCAGCTGAATCTAGTAGGGCACTTAGAGATGTACACATATCGACCGGACTAATAGAGGATTTTATTAATCTTGCTAAAGGAAATACAGAAAAAGATCTTGAAACCTGTGGGATTCTTGGTGCCTTTCTTGAAAAAGAAATATTCTATGTAACCACTTTGGTTGTACCAAAACAGGAGTCAACTTCCAATTCTTGCCAAGCTATTAAGGAGGAGGAAGTTTTTGCTATTCAAAGTGAACGGTCTCTTTCTCCTATCGGATGGATTCATACTCATCCTTCACAGAGCTGTTTCATGTCTTCAGTGGATTTACATACTCATTATCCATATCAGGTGATGGTACCTGAGGCTTTTGCCATTGTTGTGGCTCCGACTGATACCACAAGGAGCTATGGAATATATCGACTGTCTGAACCTGGTGGAATGAATGTCTTAAAAGAGTGCCAAGAGAAAGAATTTCATCCTCACAAAGATCCAGCAAATGGGTTTTCTGTTTACGAGCACTGCACCAATGTCTACAAAAATCCAAATCTGAGGTTTGAAATTTTCGATTTGCGTTGA 717 40.03 MSGQRLRITIQTVSQSSPSSIISCIECLPNDAQVSPLTLANLSEHGDLKSSNEPAESSRALRDVHISTGLIEDFINLAKGNTEKDLETCGILGAFLEKEIFYVTTLVVPKQESTSNSCQAIKEEEVFAIQSERSLSPIGWIHTHPSQSCFMSSVDLHTHYPYQVMVPEAFAIVVAPTDTTRSYGIYRLSEPGGMNVLKECQEKEFHPHKDPANGFSVYEHCTNVYKNPNLRFEIFDLR 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5887303 5891130 + Conep12aG0066600.1 Cone12ag0643 449487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0643 238 CDD MPN_AMSH_like 61 238 IPR044098 GO:0016579(InterPro)|GO:0061578(InterPro)|GO:0070536(InterPro)|GO:0140492(InterPro)
Cone12ag0643 238 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Cone12ag0643 238 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 61 168 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Cone12ag0643 238 PANTHER AMSH-LIKE PROTEASE 15 238 - GO:0005768(PANTHER)|GO:0016020(PANTHER)|GO:0070536(PANTHER)
Cone12ag0643 238 Gene3D Cytidine Deaminase, domain 2 43 238 - -
Cone12ag0643 238 SMART pad1_6 63 191 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Cone12ag0643 238 FunFam AMSH-like ubiquitin thioesterase 2 43 238 - -
Cone12ag0643 238 SUPERFAMILY JAB1/MPN domain 64 194 - -
Cone12ag0643 238 ProSiteProfiles MPN domain profile. 64 192 IPR037518 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0643 K11866 - - rcu:8282601 314.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0643 Cone-Chr12:5887303 Cone19ag0341 Cone-Chr19:2779540 2.15E-80 dispersed
Cone12ag0643 Cone-Chr12:5887303 Cone7ag0112 Cone-Chr7:480710 2.78E-81 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g704 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0643 . . . . . . . . . . . . . . . . Cma05g00011 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015210 0 0 0 0 0 0 1 1 1 0 0 1 1 0 0 1 1 1 1 0 0 0 0 1 1 0 1 0 0 1 13