Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0645 ATGTCGTTATCTTCTTCTTCAAATGGATTATTTTCTATGTCAGATTCAACAAGTGGGACCAAAACCCCTCCTCTGCCTTCAACGTCCTCAACTTTGGCATCGAAATCACAACCACGACTTTCAAATGAAAGTAGCAATGCTAATTCTTCACCTCCTCCATTATCTTCTTCCTCCTCCTCCCCCTCACCCCCTGCTCCACCTACCTCAACCTTCACGCCTCCTCCTCCAAAGTCACCCCCACATTCATTGCCGCCTCCATCGCCTTCCGTTTCACTTCCGCCACCAGAATCATCTTCGCCACCGTCTCCACCATCATCTCCGCCACCATCTCCATCTCCATCTCTGTCTACATCCCCACCCCTTCCGTCAAGTACTACTTCACCGTTCTCTCCTCCCTCACCGCCTCCTTCTAGCTCGTCTCCTAGTTTTTCCACTCCATCAAGTTCAACCCCTCCTAAAACTTCATCATCATCATCACCTCCACCAACATCCTCGGGTCGAACCTCTTATTCATCTACACCTCCACCGGGCCCACTATATGCCACATCCTCATCATCTAGTGGGAGCGGTTCTTCTCCTCCTCCTTCTGATCCTAGTAAGAACTCAGCAGTTATGCCACCACAAGGAAGCCAATCTCCTTCTAATAATAATCAAACACCTAATAATAATTCAACTACTGTGATGTCTGATTACGGCAATGCTGATCATCTTCCAAACCCACCTTCTAATTATTCAGCCAGGTCACCACCACAAAGCGGGGTTAATCCTAATTCAACCGAGCAGAAGAAGATTCATTCTCCCTCAGAATTTGACGCAAGTGCTATAGCGTCATCATCAGGTCTTACAACAAGCTCTCCTAAGCTTTCCCCGACTGAGGCTCTCACAAATACAGCTCCGGCGAACGTCAGCTCTCTGCTGTCATTGCCTTCTGCTGGGAATACAGGAGCTGTTGTCGGAGTGACTATGGCAGGAGTTTTCGTGTTTGGCATTATCTTCATTGCCACTGGGTTCATGTTTAAAAGGAGGCAGAAAAATAGAGTTGAGGACTATTCTCCTCATTACATGGCCCCTCCGGCAAGATTTCCATTATTGGAAATATGGTTGTTAAATAATGTTTTATTTTCAAATGGATATGGGACAGAGAGTCTTTATACTCAAGGCCATTCTCTTGCTATAAATAGCTTTAGGAGCCAAGGAGGCTATCCAGTTGGTGATCCAGAATCAGGTGTACTTAACAGTGGCAAGACTACCTTTAGCTATGAGGAGTTAATGCAGATAACTAATGGGTTTTCTCATCAGAACGTCCTTGGTGAGGGTGGATTTGGAAGCGTATATAAGGGTAGGCTACAAGATGGTAGAGAGGTGGCTGTGAAGCAGCTGAAGGCGGGGAGTGGACAAGGAGAGAGGGAATTCAAGGCAGAAGTCGAGATTATTAGCCGCATTCATCATCGACATTTGGTCTCTTTAGTTGGCTATTGCATATCTTCTCAACAGAGGTTGCTCATTTATGAATTTGTTCCAAATCAGACTCTAGAACATCACTTACATGGTAAAGGAATGCCGGTGCTGGAATGGACAAAAAGACTTAAGATAGCTCTAGGAGCTGCAAAGGGTCTAGCATATATACATGAAGATTGTCATCCAAAAATTATTCATAGAGACATAAAATCTGCAAACATTTTATTGGATGAGGCTTTCGAGGCACAGGTAGCAGATTTTGGACTTGCTAGACTGGCAAATGACACTAACACTCATGTATCAACTCGAGTCATGGGAACATTCGGGTATCTAGCACCCGAGTATGCAACAAGTGGGAAGTTGACAGATAGGTCAGATGTATTCTCCTTTGGAGTTGTGCTTCTTGAGCTTATCACTGGGCGTAAACCTGTTGATCCAACTCAGCCTGTGGGAGAAGAGAGTTTGGTTGAATGGGCCCGTCCACTCCTTGTTCGCACCCTTGATACTGGTGAATTCGGTGAATTGGTAGACCCACGTCTTGGAAAGCAATATGTGGAAGGTGAAATGTTTAAAATGATTGAAGCAGCAGCAGCATGTGTTCGCCATTTAGCTCCGAAAAGACCTCGAATGTTGCAGGTGGCAAGGGCATTAGATTTTGAAGGTGAAGTTAGAGATCTATCAAATGGTGTCAAAGTCGGCCAAAGCACGGCTTATGATTCCGCTCAATACGATCAAGAAATCCTGAAATTTCGGAGAATGACATTCGGAAGGACGGATAGCTCAGATTACGAATTACATAGTGGAGAATTCAATTCCAGAGAAGTATCTGAAACTCAAGAATCACAGAAATCTAGCGATATATCAAGTTATGAATCAGATTCTCAGGTGTTTAATCCGCATAGTCTCAGTGGGCGCCAAACTACTAATACTACAACTACTATAGCTACGTCCTATGGTTGA 2418 44.75 MSLSSSSNGLFSMSDSTSGTKTPPLPSTSSTLASKSQPRLSNESSNANSSPPPLSSSSSSPSPPAPPTSTFTPPPPKSPPHSLPPPSPSVSLPPPESSSPPSPPSSPPPSPSPSLSTSPPLPSSTTSPFSPPSPPPSSSSPSFSTPSSSTPPKTSSSSSPPPTSSGRTSYSSTPPPGPLYATSSSSSGSGSSPPPSDPSKNSAVMPPQGSQSPSNNNQTPNNNSTTVMSDYGNADHLPNPPSNYSARSPPQSGVNPNSTEQKKIHSPSEFDASAIASSSGLTTSSPKLSPTEALTNTAPANVSSLLSLPSAGNTGAVVGVTMAGVFVFGIIFIATGFMFKRRQKNRVEDYSPHYMAPPARFPLLEIWLLNNVLFSNGYGTESLYTQGHSLAINSFRSQGGYPVGDPESGVLNSGKTTFSYEELMQITNGFSHQNVLGEGGFGSVYKGRLQDGREVAVKQLKAGSGQGEREFKAEVEIISRIHHRHLVSLVGYCISSQQRLLIYEFVPNQTLEHHLHGKGMPVLEWTKRLKIALGAAKGLAYIHEDCHPKIIHRDIKSANILLDEAFEAQVADFGLARLANDTNTHVSTRVMGTFGYLAPEYATSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPVGEESLVEWARPLLVRTLDTGEFGELVDPRLGKQYVEGEMFKMIEAAAACVRHLAPKRPRMLQVARALDFEGEVRDLSNGVKVGQSTAYDSAQYDQEILKFRRMTFGRTDSSDYELHSGEFNSREVSETQESQKSSDISSYESDSQVFNPHSLSGRQTTNTTTTIATSYG 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5901197 5905239 + Conep12aG0066800.1 Cone12ag0645 449489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0645 805 MobiDBLite consensus disorder prediction 142 263 - -
Cone12ag0645 805 ProSitePatterns Protein kinases ATP-binding region signature. 436 458 IPR017441 GO:0005524(InterPro)
Cone12ag0645 805 MobiDBLite consensus disorder prediction 56 141 - -
Cone12ag0645 805 CDD STKc_IRAK 436 704 - -
Cone12ag0645 805 MobiDBLite consensus disorder prediction 1 267 - -
Cone12ag0645 805 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 285 739 IPR047117 -
Cone12ag0645 805 Gene3D Phosphorylase Kinase; domain 1 405 505 - -
Cone12ag0645 805 Pfam Protein tyrosine and serine/threonine kinase 433 633 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag0645 805 SMART serkin_6 430 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0645 805 FunFam Proline-rich receptor-like protein kinase PERK8 403 505 - -
Cone12ag0645 805 FunFam proline-rich receptor-like protein kinase PERK8 506 718 - -
Cone12ag0645 805 MobiDBLite consensus disorder prediction 1 55 - -
Cone12ag0645 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 550 562 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag0645 805 Gene3D Transferase(Phosphotransferase) domain 1 506 715 - -
Cone12ag0645 805 MobiDBLite consensus disorder prediction 747 805 - -
Cone12ag0645 805 SUPERFAMILY Protein kinase-like (PK-like) 410 704 IPR011009 -
Cone12ag0645 805 MobiDBLite consensus disorder prediction 760 805 - -
Cone12ag0645 805 ProSiteProfiles Protein kinase domain profile. 430 706 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0645 Cone-Chr12:5901197 Cone2ag0408 Cone-Chr2:2164959 1.04E-167 dispersed
Cone12ag0645 Cone-Chr12:5901197 Cone12ag0650 Cone-Chr12:5934516 3.56E-74 proximal
Cone12ag0645 Cone-Chr12:5901197 Cone13ag1041 Cone-Chr13:8618068 2.80E-196 wgd
Cone12ag0645 Cone-Chr12:5901197 Cone19ag1031 Cone-Chr19:7670104 1.38E-183 wgd
Cone12ag0645 Cone-Chr12:5901197 Cone8ag0663 Cone-Chr8:6652064 0 wgd
Cone12ag0645 Cone-Chr12:5901197 Cone8ag0675 Cone-Chr8:6742879 3.63E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81956 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0645 - - - 0.0