Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0650 ATGATGGGCCTGGGAAACTGTTTGGGAACAGAGAAAGTGAAAGAGAGTGAAAACTTTTTGTTGAAGAAAATGAGGATGGCAAGAAGTGGTGTGTTCTGGAAAGTGGGTTTCGTCGCGGTTTTGGCACTAATGGAGGTTTCTTTTGCAAGTTTATCTCCTTCCGGTATTAATTATGAAGTTGTAGCTTTGATGGCCATAAAGAATGATCTGATAGATCCTCATAACGTTCTGGAAAATTGGGACATTAATTCTGTGGATCCTTGTAGCTGGAGGATGGTTACTTGCTCTCCTGACGGTTACGTTTCTGCTCTGGGTCTTCCTAGCCAGAGTTTGTCTGGCACTTTATCTCCAGGAATTGGAAACCTTAGTAACTTGCAATCTGTGTTGCTTCAAAACAATGCTTTTTCTGGCCCAGTTCCAGCTACAATTGGAAAACTGGATAAGCTTCAGACTCTTGATCTATCAAACAATATGTTTAGTGGTGAAATTCCTGCCTCTTTGGGTGACTTAAGCAACCTCAACTATTTGCGGTTAAACAACAACAGCCTTATTGGACCATGTCCGGATTCTTTATCCAAAGTAGAAGGTCTTACTCTCGTGGACTTTTCTTTTAACAATCTGAGTGGTTCCTTACCAAAAATATCAGCAAGAACTTTCAAAATTGTCGGAAACCCATTAATCTGCGGACCCAACAACTGTTCTGCTGTCTTCCCCGAGCCACTTTCCTTCTCGCCTGATTCTCTAAGTGGTGAATCAGTATCAGAATCTAAGAACCACCGCATTGCAATCGCCTTTTCAGCCAGTTTCTCTGTTGCTTTTATTGTCATTGTTATTGTTGGATCGCTTATCTGGTGGAGATATAGACACAATCAGCAAGTTTTCTTTGATGTCAATGCAGATCAATATGATCCGGAGGTATGCTTAGGCCATTTGAAAAGGTTTTCCTTTAAGGAATTAAGGGCTGCTACGGATCATTTCAACTCGAAGAACATATTAGGGAGAGGTGGGTTTGGGATTGTATATAAGGGTTGTTTGAATGATGGGACCCTTGTGGCAGTCAAGAGGTTGAAGGACTATAATACAGCTGGTGGGGAAATCCAATTTCAGACTGAAGTAGAGATGATAAGCTTGGCTTTGCATCGGAATCTTCTACGGCTTTTCGGGTTTTGCTCAACTGAAAATGAACGCCTTCTCATTTACCCTTACATGCCAAATGGAAGCGTGGCATCTCGATTAAGAGATTGTATTCATGGCCGGCCAGCTTTAGACTGGATCAGGCGAAAGAGAATAGCTTTAGGTACGGCAAGAGGGCTAGTTTACTTGCACGAGCAATGTGACCCAAAAATCATACACCGAGATGTCAAAGCGGCTAATATTTTGCTTGATGAAGATTTTGAGGCCGTTGTTGGAGATTTTGGTTTGGCTAAACTCTTGGATCACAGAGATTCCCATGTAACTACAGCCGTTCGTGGAACTGTGGGCCATATTGCCCCAGAGTATCTCTCAACTGGGCAGTCATCGGAAAAAACTGATGTGTTCGGTTTTGGGATCTTACTTCTTGAGCTTATCACGGGCCAAAAGGCTTTGGATTTTGGTCGATCAGCAAACCAGAAGGGTGTGATGCTTGATTGGGTGAAAAAGCTTCATCAAGAGGGGAAGCTAAACCTAATGGTGGATAAGGATCTAAAGGCAAACTTTGACCAGGTTGAATTAGATGAAATGGTACAAGTAGCTCTCTTGTGCACCCAATTCAATCCGAACCACCGGCCGAAAATGTCGGAAGTATTGAAGATGTTAGAAGGTGATGGTTTAGCCGAGAAGTGGGAGGCTTCATATCCAATGGAGACACCGAGATCTCAATCAAGTGATCAAACCCCTCCCCAAAGGTACTCAGATTACATTGATGAATCTTCACTAATAGTAGAAGCCATGGAGCTTTCTGGACCTAGGTGA 1953 42.86 MMGLGNCLGTEKVKESENFLLKKMRMARSGVFWKVGFVAVLALMEVSFASLSPSGINYEVVALMAIKNDLIDPHNVLENWDINSVDPCSWRMVTCSPDGYVSALGLPSQSLSGTLSPGIGNLSNLQSVLLQNNAFSGPVPATIGKLDKLQTLDLSNNMFSGEIPASLGDLSNLNYLRLNNNSLIGPCPDSLSKVEGLTLVDFSFNNLSGSLPKISARTFKIVGNPLICGPNNCSAVFPEPLSFSPDSLSGESVSESKNHRIAIAFSASFSVAFIVIVIVGSLIWWRYRHNQQVFFDVNADQYDPEVCLGHLKRFSFKELRAATDHFNSKNILGRGGFGIVYKGCLNDGTLVAVKRLKDYNTAGGEIQFQTEVEMISLALHRNLLRLFGFCSTENERLLIYPYMPNGSVASRLRDCIHGRPALDWIRRKRIALGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRSANQKGVMLDWVKKLHQEGKLNLMVDKDLKANFDQVELDEMVQVALLCTQFNPNHRPKMSEVLKMLEGDGLAEKWEASYPMETPRSQSSDQTPPQRYSDYIDESSLIVEAMELSGPR 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5934516 5940056 - Conep12aG0067300.1 Cone12ag0650 449494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0650 650 Pfam Leucine rich repeat N-terminal domain 57 96 IPR013210 -
Cone12ag0650 650 Pfam Leucine rich repeat 123 183 IPR001611 GO:0005515(InterPro)
Cone12ag0650 650 FunFam Somatic embryogenesis receptor kinase 1 294 402 - -
Cone12ag0650 650 MobiDBLite consensus disorder prediction 614 632 - -
Cone12ag0650 650 ProSiteProfiles Protein kinase domain profile. 326 609 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0650 650 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 39 650 - -
Cone12ag0650 650 ProSitePatterns Protein kinases ATP-binding region signature. 332 354 IPR017441 GO:0005524(InterPro)
Cone12ag0650 650 Gene3D Ribonuclease Inhibitor 56 235 IPR032675 -
Cone12ag0650 650 FunFam Putative LRR receptor-like serine/threonine-protein kinase 56 236 - -
Cone12ag0650 650 MobiDBLite consensus disorder prediction 611 632 - -
Cone12ag0650 650 SMART serkin_6 326 599 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0650 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag0650 650 FunFam Somatic embryogenesis receptor-like kinase 1 403 619 - -
Cone12ag0650 650 SUPERFAMILY Protein kinase-like (PK-like) 310 628 IPR011009 -
Cone12ag0650 650 Pfam Protein tyrosine and serine/threonine kinase 329 599 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag0650 650 SUPERFAMILY L domain-like 57 220 - -
Cone12ag0650 650 Gene3D Transferase(Phosphotransferase) domain 1 403 616 - -
Cone12ag0650 650 Gene3D Phosphorylase Kinase; domain 1 294 402 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0650 Cone-Chr12:5934516 Cone8ag0675 Cone-Chr8:6742879 0 dispersed
Cone12ag0645 Cone-Chr12:5901197 Cone12ag0650 Cone-Chr12:5934516 3.56E-74 proximal
Cone12ag0650 Cone-Chr12:5934516 Cone13ag1054 Cone-Chr13:8658071 4.31E-282 wgd
Cone12ag0650 Cone-Chr12:5934516 Cone19ag1043 Cone-Chr19:7708908 2.22E-304 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81957 PF13499 EF-hand_7 6.30E-15 CL0220 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0650 - - - 0.0