Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0658 ATGATGAAGAACAAATCCCTCTTCACCACAGTTCTTCTTCTCCTTCTATCTCGAAAGGCAACTAAGGGAGATCCAAGATCCCAAACGGTCAAGATAGAATGTGGGACCCAGAAACAGTATAATACGACGGTCTCCGGCCCGAACTTCATCGCCACAATGCAGAAGATAAACAAAGAGGTGCAAAACACGGGCTACGGAGTAGCAGTTACTGGTTCCGGGCCGGATACAAGCTACGGACTGGCTCAATGCTACGGAGATCTCTCTTTAATTGACTGCATACTATGCTATACCGAGTCCCGTACGCTTATTCCCCAATGCTTCCCTCACAACGGGGCCCGCCTATACCTCGATGGGTGCTTCATGAGGTCTGAGAACTATAGCTTTTACGAAGAATACACCGGACCAGAAGACACAACTGTTTGTGGGAATACAACCCAGAAGAACTCAATGTTTGTTAAGTCAGTTAAACAGGTGGTTAACAGGGTGGTTATGAATGCACCGAATAATCAAGGATATTCTAGAGCTCAGGCAGCCGTTGTGGGATCCACGAATGAATCGGTTTATGTATTGGCGAATTGTTGGAGGAGTTTGAATTCGAGCGCTTGTAGTATGTGTTTGGAGAATGCGACTAAATCAATATCAGGTTGTTTTCCTTGGTCAGAAGGAAGAGCATTGAATACTGGTTGCTTTATGAGATATTCGGACACAGACTTTCTTAATAAAGTAGATGGGAATGGCAGCTCAAGAGGTACCGTAACAGCGATAGTTGTTTCAGTTGTAAGTTCTGTTGTTGTTCTGGTAATTGTAGCAATATTTGGAGTTTATATCTGGAAACGAAGATATGTCCAAAAGAAAAGAAGAGGTTCAAATGATGCGGAGAAACTGGCAAAAATTCTTCATGACAGCAGCTTAAACTTCAAGTATTCTACCCTTGAAAATGCAACACGGTCTTTTGACAATTCTAACAAGCTTGGACAAGGAGGATTTGGCACTGTTTATAAGGGAGTACTACAAGATGGAAGAGAAATTGCTGTCAAGAGACTTTTCTTTAACAACAAACATAGAGCATCAGATTTCTACAATGAAGTGAACATAATAAGTAGTGTAGAACATAAGAACCTCGTAAGATTGTTAGGATGCAGTTGTTCAGGACCAGAAAGCCTACTTGTCTATGAGTTTCTCCCAAACAAGAGTCTTGACCGATTTATTTTCGATACTGATAAGGGTAAGGCACTAAGTTGGCAGAAGAGATATGAAATCATAATCGGAACGGCTGAGGGTCTAGTCTACTTATATGAGAACTCAACTAACAGAATCATTCATAGGGATATAAAAGCTAGCAATATTCTCTTGGATTCAAAGTTTAGGGCTAAAATCGCTGATTTCGGTTTAGCAAGGTCTTTCGAAGAGGATAAGAGTCATATCAGTACTGCCATTGCTGGAACACTAGGATATATGGCTCCAGAATATCTAGCTCTGGGGAAGTTAACGGAAAAGGCGGATATTTATAGTTTTGGAGTTCTTTTGTTAGAGACAGTTAGCGGATTGCAGAATAATCAGAGTAAAACCTCCGAGGATTCAGATAGCTTAATCACTATTATGTGGAGGCAATTTCAATCAGGAACAGTTGAGGAATTATATGACCCGAATCTAATGTTGCAGAACAACCCAAACAGCAATATCAGGCAAGAAGTTTTCAGAGTGGTGCATATAGCTTTTTTATGCACCCAAGAGATTCCTTCATTAAGACCAAGCATGTCAAAGACACTTCAAATGCTACTAAACAAGGAAGGGGAAGACTTACCGGCCCCTGTGACCCCACCTTTCGTGAATGAACGGACCATGGAATTTAATGAAACGTTAGAATATCCCTTGTACCCGTTAAGAACAGATTCTTCTTCTTCGGTTGCTACTATGGCCCATAGCTCTTTCTATGGCAGGTGA 1944 41.41 MMKNKSLFTTVLLLLLSRKATKGDPRSQTVKIECGTQKQYNTTVSGPNFIATMQKINKEVQNTGYGVAVTGSGPDTSYGLAQCYGDLSLIDCILCYTESRTLIPQCFPHNGARLYLDGCFMRSENYSFYEEYTGPEDTTVCGNTTQKNSMFVKSVKQVVNRVVMNAPNNQGYSRAQAAVVGSTNESVYVLANCWRSLNSSACSMCLENATKSISGCFPWSEGRALNTGCFMRYSDTDFLNKVDGNGSSRGTVTAIVVSVVSSVVVLVIVAIFGVYIWKRRYVQKKRRGSNDAEKLAKILHDSSLNFKYSTLENATRSFDNSNKLGQGGFGTVYKGVLQDGREIAVKRLFFNNKHRASDFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRFIFDTDKGKALSWQKRYEIIIGTAEGLVYLYENSTNRIIHRDIKASNILLDSKFRAKIADFGLARSFEEDKSHISTAIAGTLGYMAPEYLALGKLTEKADIYSFGVLLLETVSGLQNNQSKTSEDSDSLITIMWRQFQSGTVEELYDPNLMLQNNPNSNIRQEVFRVVHIAFLCTQEIPSLRPSMSKTLQMLLNKEGEDLPAPVTPPFVNERTMEFNETLEYPLYPLRTDSSSSVATMAHSSFYGR 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6028821 6033828 - Conep12aG0068100.1 Cone12ag0658 449502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0658 647 FunFam Cysteine-rich receptor-like protein kinase 2 394 601 - -
Cone12ag0658 647 FunFam Cysteine-rich receptor-like protein kinase 2 27 128 - -
Cone12ag0658 647 Gene3D - 26 128 IPR038408 -
Cone12ag0658 647 Gene3D - 137 238 IPR038408 -
Cone12ag0658 647 ProSiteProfiles Protein kinase domain profile. 318 610 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0658 647 ProSiteProfiles Gnk2-homologous domain profile. 133 238 IPR002902 -
Cone12ag0658 647 SMART serkin_6 318 593 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0658 647 FunFam Cysteine-rich receptor-like protein kinase 3 137 238 - -
Cone12ag0658 647 Pfam Salt stress response/antifungal 34 126 IPR002902 -
Cone12ag0658 647 Pfam Salt stress response/antifungal 141 235 IPR002902 -
Cone12ag0658 647 Gene3D Phosphorylase Kinase; domain 1 279 393 - -
Cone12ag0658 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag0658 647 ProSiteProfiles Gnk2-homologous domain profile. 27 128 IPR002902 -
Cone12ag0658 647 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524(InterPro)
Cone12ag0658 647 FunFam Putative DUF26-domain receptor-like protein kinase family protein 287 393 - -
Cone12ag0658 647 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 160 615 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cone12ag0658 647 CDD STKc_IRAK 324 593 - -
Cone12ag0658 647 Pfam Protein kinase domain 319 591 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0658 647 SUPERFAMILY Protein kinase-like (PK-like) 303 615 IPR011009 -
Cone12ag0658 647 Gene3D Transferase(Phosphotransferase) domain 1 394 601 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0658 Cone-Chr12:6028821 Cone2ag0112 Cone-Chr2:550324 8.96E-162 dispersed
Cone12ag0658 Cone-Chr12:6028821 Cone12ag0659 Cone-Chr12:6043620 2.91E-150 tandem
Cone11ag0105 Cone-Chr11:455161 Cone12ag0658 Cone-Chr12:6028821 1.30E-142 wgd
Cone12ag0658 Cone-Chr12:6028821 Cone13ag0150 Cone-Chr13:946347 3.34E-150 wgd
Cone12ag0658 Cone-Chr12:6028821 Cone8ag0679 Cone-Chr8:6769285 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81958 PF12174 RST 6.80E-27 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0658 - - - 0.0