Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0679 ATGGCGAGTCCTAGTCCTTCTTCTTCTTCTTCTTACTCTTGTTCACTGAAGCGGAAGAGACCACCGATGATTGAAATCCCTACCGTCCTGCGAGAAATTCCCCTCAACAGGCTCCGAGAATCCACGCCTCGAAGCGACGCCGTATCATTCAGTGGAAATGGGGTTGCTGTCTCCTCTGCCAAGGGCAAGAAAAAGTTCATAGAAGATACCTACAAAATCGTTGCGAATAGTGGTTTTTTCGGTGTTTATGATGGACATGGAGGAAGGAAGGCAGCGGAATTTGCTGCAGAGAATTTGCATAACAACATTTTCGAGATGATGAAGAATTCATTGGAGAAGGAGGAGGCTGTTAAATCCGGTTATTCGAAAACAGATCGGGACTTTTTGAACTTGGGTGTAGGCAGTGGTGCTTGCTGTGTGACAGCTCTGATTGAAGGGCAAGAGATTGTGATTTCAAACTTGGGAGATTGCAGGGCTGTTCTTTCAAGAGATGGAGTAGCTGAAGCCCTTACTAAAGACCATAGAGTGGAAGAAGAGGAAGAAAGAAATAGAATAGAGGATAAGGGAGGATATGTGGAGATTCATAGGGGAAGGTGGAGAGTCCATGGAGTCCTTTCAGTTTCTAGAAGCATTGGAGATGCTCATTTGAAGGATTGGGTGGTGGCTGAGCCTGATACAAAGATCTTAACTTTGACCCCAGATATGGAATTTCTTGTCCTAGCCTCAGACGGTCTTTGGGAAGAGGTTTCCAATCAAGAGGCAGTTGATGTTGTCAGGCGATTATTATGTTTGGCTGATAAGAAAGCGGGCGAGAAAATTCTCCATAAAGGTATTGATCATGAGAAAGGGCATGTGCATATAAGCCCATCATCGTCTAAGTTAAGGAGAATTTCATTAGTGAAGCAAAAGAGTAGAGGGTTGAGTCAATCTCCAGGCCATAACAGGATAATTAATAATAATAATGCTAATAACAATAATAGTAGCTGGAAAGATAATGAAGATGAGAATGTATCTTGTGAAAATGAAAGTCCAGCATCAAAGTCCAGAAGGATATCATTAGTGAAGAGACTAGACATAAAGACCGACTCTCTGAGCGAGGAGAATATAGGTGGCGGCAATGATGGGAAGAGAATTGCCAGTACTGGCGGTGGTTGTCTTGTAGGTGCTTGTAAAGAGCTGGTAGACCTTGCTCTAAATCGGGGCAGTTTTGATGATATTACAGTGATGATAATTGATCTAAAGCACGTTAGAACTAACAGTCAATCTGCATGA 1272 43.0 MASPSPSSSSSYSCSLKRKRPPMIEIPTVLREIPLNRLRESTPRSDAVSFSGNGVAVSSAKGKKKFIEDTYKIVANSGFFGVYDGHGGRKAAEFAAENLHNNIFEMMKNSLEKEEAVKSGYSKTDRDFLNLGVGSGACCVTALIEGQEIVISNLGDCRAVLSRDGVAEALTKDHRVEEEEERNRIEDKGGYVEIHRGRWRVHGVLSVSRSIGDAHLKDWVVAEPDTKILTLTPDMEFLVLASDGLWEEVSNQEAVDVVRRLLCLADKKAGEKILHKGIDHEKGHVHISPSSSKLRRISLVKQKSRGLSQSPGHNRIINNNNANNNNSSWKDNEDENVSCENESPASKSRRISLVKRLDIKTDSLSEENIGGGNDGKRIASTGGGCLVGACKELVDLALNRGSFDDITVMIIDLKHVRTNSQSA 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6226908 6229087 + Conep12aG0070200.1 Cone12ag0679 449523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0679 423 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169(InterPro)
Cone12ag0679 423 Gene3D - 314 422 IPR036457 -
Cone12ag0679 423 ProSiteProfiles PPM-type phosphatase domain profile. 54 413 IPR001932 -
Cone12ag0679 423 SMART PP2C_4 42 411 IPR001932 -
Cone12ag0679 423 MobiDBLite consensus disorder prediction 303 345 - -
Cone12ag0679 423 Gene3D - 49 290 IPR036457 -
Cone12ag0679 423 SUPERFAMILY PP2C-like 53 414 IPR036457 -
Cone12ag0679 423 PANTHER PROTEIN PHOSPHATASE 55 412 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone12ag0679 423 Pfam Protein phosphatase 2C 75 278 IPR001932 -
Cone12ag0679 423 SMART PP2C_SIG_2 45 413 IPR001932 -
Cone12ag0679 423 MobiDBLite consensus disorder prediction 303 332 - -
Cone12ag0679 423 CDD PP2Cc 53 280 IPR001932 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0679 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0679 Cone-Chr12:6226908 Cone7ag0053 Cone-Chr7:230820 1.47E-74 dispersed
Cone8ag1300 Cone-Chr8:10628497 Cone12ag0679 Cone-Chr12:6226908 3.17E-22 dispersed
Cone12ag0679 Cone-Chr12:6226908 Cone4ag0057 Cone-Chr4:293560 1.93E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g634 Blo01g00382 . Bda01g02205 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0679 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001841 6 1 3 2 4 2 2 2 2 2 1 2 2 1 2 3 2 5 2 2 2 2 2 2 1 2 1 2 3 3 68