Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0682 ATGTTAGGCCAAGAAGTCTCATGGACTGAACGTTCACCACCTAATAATAAATCTCATTCCAGTATCCAGCAGCCACAGAATAGTAAACTGTGGCCCTTGCCGCCACTTCAGCCACTGATAATCAGCCGGAAAACTCTTTCCAAGTGGCCTGAAGCAAGTTATGATGATCTCGGAATTTGGCCAAGTCCTCAAACTCCAAGAAACTTGGAACAAAGCGTAAGAGAATTTCAGTTCAAGAAAGAAAAACTTTCATTTTTCGATAAGGAATGTTCAAGAATAGCTGATCATATATACTTGGGAAGTGACTCTATTGCGAAGAACTTTGAGGTTCTGAAGCATAACGAGATAAGTCATGTGCTAAATTGTGTCGGGTTTGTTTGTCCCGAATATTTCAAGAACAATTTCGTCTACAAAACACTTTGGCTTCAAGACAGCCCTTCGGAGGATATCACGAGTATTCTTTACGACGTGTTTGATTACTTTGAGGATGTAAGAGAACAAAATGGGAGAGTTTTTGTTCACTGTTGCCAAGGAGTTTCTAGATCGACCTCTTTAGTTATTGCATATCTCATGTGGAAGAAAAATCAAAGTTTCAAAGATGCTTTTCAATATGTCAAGGCGGCAAGAGGAGTAGCAAATCCGAACAGGAGTTTTGCTTTTCAGTTATTGCAATGTCAGAAACGGGTTCATGATGTTTTGGTTAGTCCAGACTCGATTTTGAGGATGTATCGTATCGGGCCTCACTCATCTTATGATCCTCTTCGTCTCGTCCCGAAAATGTTGAATATCCCGGGTAAGAAAGGGCTTGATTCTCGTGGAGCGTTTATTGTGCAACTTCCATATTCTATCTTTGTTTGGGTAGGGAAGGATTGTGACATGTTGATGTCGAAAATGGCAAGAGTAGCCGCTTTTCGGTTTGTTAGATATGAGAGGGCAAAGGGTCCGGTTGTTAGAATCGATGAGGGAAAAGAGCCGGTGGAATTTTGGGATGCTCTCGAGAATGAGAAACTCTCATCAAATGTTTGTGACAAACTGGAGTTTGAAAACGAAACTCCATCTTGTGGAGATGGTAATAAAAGGCAGGTTGATGAATATGATCTGGATTTTGGGATTTTCTATAAGGCACTATCTAATGGGGTTGTACCACCGATTTCAATAGCAACTGCACAGTTAGAAGATTATCATCCTATGATGAAAGAACTTACCAATCCCTCCAAGCTAAGTTGTGAAATAACTTCACATTTGGGTGAAAATTATGATACAATTGAACAGCCAGATGTCTTATTGAAAATGCATTACCAACGCCACCATTGTCCCCGATGA 1323 40.51 MLGQEVSWTERSPPNNKSHSSIQQPQNSKLWPLPPLQPLIISRKTLSKWPEASYDDLGIWPSPQTPRNLEQSVREFQFKKEKLSFFDKECSRIADHIYLGSDSIAKNFEVLKHNEISHVLNCVGFVCPEYFKNNFVYKTLWLQDSPSEDITSILYDVFDYFEDVREQNGRVFVHCCQGVSRSTSLVIAYLMWKKNQSFKDAFQYVKAARGVANPNRSFAFQLLQCQKRVHDVLVSPDSILRMYRIGPHSSYDPLRLVPKMLNIPGKKGLDSRGAFIVQLPYSIFVWVGKDCDMLMSKMARVAAFRFVRYERAKGPVVRIDEGKEPVEFWDALENEKLSSNVCDKLEFENETPSCGDGNKRQVDEYDLDFGIFYKALSNGVVPPISIATAQLEDYHPMMKELTNPSKLSCEITSHLGENYDTIEQPDVLLKMHYQRHHCPR 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6241913 6243235 + Conep12aG0070500.1 Cone12ag0682 449526

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0682 440 SMART VILL_6 241 335 IPR007122 GO:0051015(InterPro)
Cone12ag0682 440 MobiDBLite consensus disorder prediction 8 30 - -
Cone12ag0682 440 ProSiteProfiles Dual specificity protein phosphatase domain profile. 89 231 IPR020422 GO:0006470(InterPro)
Cone12ag0682 440 PANTHER MKPA PROTEIN 7 388 - -
Cone12ag0682 440 ProSitePatterns Tyrosine specific protein phosphatases active site. 173 183 IPR016130 GO:0016311(InterPro)
Cone12ag0682 440 CDD DSP 90 224 - -
Cone12ag0682 440 Gene3D Severin 240 339 IPR029006 -
Cone12ag0682 440 SUPERFAMILY Actin depolymerizing proteins 233 334 - -
Cone12ag0682 440 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 148 209 IPR000387 GO:0016311(InterPro)
Cone12ag0682 440 Gene3D Protein tyrosine phosphatase superfamily 67 232 IPR029021 -
Cone12ag0682 440 SMART dsp_5 89 228 IPR020422 GO:0006470(InterPro)
Cone12ag0682 440 Pfam Dual specificity phosphatase, catalytic domain 97 227 IPR000340 GO:0016311(InterPro)
Cone12ag0682 440 MobiDBLite consensus disorder prediction 1 30 - -
Cone12ag0682 440 Pfam Gelsolin repeat 269 329 IPR007123 -
Cone12ag0682 440 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 84 229 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0682 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0682 Cone-Chr12:6241913 Cone5ag0297 Cone-Chr5:1254999 4.19E-153 dispersed
Cone13ag0255 Cone-Chr13:1750123 Cone12ag0682 Cone-Chr12:6241913 1.87E-13 transposed
Cone12ag0682 Cone-Chr12:6241913 Cone13ag1091 Cone-Chr13:8834505 7.68E-175 wgd
Cone12ag0682 Cone-Chr12:6241913 Cone19ag1080 Cone-Chr19:7866960 1.80E-174 wgd
Cone12ag0682 Cone-Chr12:6241913 Cone8ag0701 Cone-Chr8:7076874 4.71E-278 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g621 . . . . . . . Bma15g00226 . Cmo18g00757 . Cma18g00752 . Car18g00686 . Cpe09g00547 Cpe01g01575 Bhi07g01805 . . . . . . Cla05g02597 Cam05g2788 Cec05g2826 Cco05g2858 Clacu05g2790 Cmu05g2638 Cre05g2754 Cone13ag1091 Cone19ag1080 Cone8ag0701 Cone12ag0682 Lsi04g00606 Csa05g02278 Chy10g00844 Cme10g00586 . . . . . . . . . . . Cma04g01778 . Car04g01803 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029919 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 2