Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0688 ATGGCAATTCCTCTATCTCTCCTGATAATCATGCCTTTTCTATGTTCAACCCTCACTTTCTCTTCACCAGTTCAAGACCCAGAAGTTGTAGTCCAAGAAGTACTTCAGAGCATCAATGGGTCTAGAAGGCAATTGGGCTATCTATCATGTGGCAACGGGAACCCCATTGATGAATGTTGGAGGTGTGACCCCAATTGGGAAAAGAACCGCAAAAGGTTAGCAAATTGTGCAATAGGGTTTGGCAAAAATGCGATTGGAGGCAGGGATGGAAAGTTCTACGTGGTCTCAGATGCGTCTGATAACAACCCCGTAAATCCCAAACCCGGCACTCTTAGGCATGCAGTGATCCAAGATAAACCCCTTTGGATCATCTTCAAACGGGACATGGTCATCAAGCTAAAAGCCGAACTTATAATGAACTCATTCAAGACCATCGATGGACGAGGAGCCCAAGTACACATTGCTGGCGGGCCGTGCATTACTATACAATATGTGACGAATATTATCATTCATGGACTCAATATTCATGACTGTAAAAGAGGAGGGAATACTTATGTTAGAGATTCTCCAAAGCATTTTGGGTGGAGGACTCTATCAGATGGAGATGGGATTTCAGTTTTTGGTGGAAGCCATATTTGGATTGATCATTGTTCTCTTTCTCAGTGTCGCGACGGCTTGATCGATGTGATTCATGGGTCTTCGGCCATTACAATCTCTAATAATTACATGACACAGCACGATAAAGTGATGCTTTTGGGTCACAGTGATAGTTATAAAACTGATAAGCGTATGCAAGTTACTATTGCTTTCAACCATTTTGGAGAAGGGCTTGTGCAAAGGATGCCAAGATGTAGATTTGGGTATTTTCATGTGGTGAATAATGACTACACCCATTGGAAAATGTATGCAATTGGGGGTAGTGCTTCTCCTACAATCAATAGTCAAGGCAATAGATTTCTGGCTCCCAATATCGTATCGGCAAAAGAGATTACAAAACACGAGACGCAAGGGAATGAATGGAAGAAATGGAGCTGGAGATCGGAAGGAGATTTGATGTTGAATGGGGCATTCTTTACACAATCTGGGGCTAGAACATCTTCTGCCTTCGCAAAGGCAATGAGCCTAAGCGCAAAACCATCTAACTGGGTGGGTTCAATCACTGCCGGGGCAGGTGTTCTTAAATGCAAAAAGGGTTCAGCTTGCTCATGA 1209 43.34 MAIPLSLLIIMPFLCSTLTFSSPVQDPEVVVQEVLQSINGSRRQLGYLSCGNGNPIDECWRCDPNWEKNRKRLANCAIGFGKNAIGGRDGKFYVVSDASDNNPVNPKPGTLRHAVIQDKPLWIIFKRDMVIKLKAELIMNSFKTIDGRGAQVHIAGGPCITIQYVTNIIIHGLNIHDCKRGGNTYVRDSPKHFGWRTLSDGDGISVFGGSHIWIDHCSLSQCRDGLIDVIHGSSAITISNNYMTQHDKVMLLGHSDSYKTDKRMQVTIAFNHFGEGLVQRMPRCRFGYFHVVNNDYTHWKMYAIGGSASPTINSQGNRFLAPNIVSAKEITKHETQGNEWKKWSWRSEGDLMLNGAFFTQSGARTSSAFAKAMSLSAKPSNWVGSITAGAGVLKCKKGSACS 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6283813 6285469 - Conep12aG0071100.1 Cone12ag0688 449532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0688 402 SMART amb_all 128 325 IPR002022 -
Cone12ag0688 402 Pfam Pectate lyase 138 319 IPR002022 -
Cone12ag0688 402 SUPERFAMILY Pectin lyase-like 39 395 IPR011050 -
Cone12ag0688 402 FunFam Pectate lyase 53 394 - -
Cone12ag0688 402 Gene3D - 53 394 IPR012334 -
Cone12ag0688 402 PANTHER PECTATE LYASE 18-RELATED 17 398 IPR045032 GO:0030570(InterPro)
Cone12ag0688 402 PRINTS Pollen allergen Amb family signature 136 152 IPR018082 -
Cone12ag0688 402 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Cone12ag0688 402 PRINTS Pollen allergen Amb family signature 100 125 IPR018082 -
Cone12ag0688 402 PRINTS Pollen allergen Amb family signature 200 221 IPR018082 -
Cone12ag0688 402 PRINTS Pollen allergen Amb family signature 372 395 IPR018082 -
Cone12ag0688 402 PRINTS Pollen allergen Amb family signature 343 367 IPR018082 -
Cone12ag0688 402 PRINTS Pollen allergen Amb family signature 302 321 IPR018082 -
Cone12ag0688 402 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0688 Cone-Chr12:6283813 Cone2ag0944 Cone-Chr2:35120894 8.17E-240 dispersed
Cone12ag0688 Cone-Chr12:6283813 Cone13ag0192 Cone-Chr13:1209138 3.46E-228 wgd
Cone12ag0688 Cone-Chr12:6283813 Cone16ag0056 Cone-Chr16:296641 3.95E-232 wgd
Cone12ag0688 Cone-Chr12:6283813 Cone8ag0710 Cone-Chr8:7123264 1.14E-286 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0688 K01728 - rcu:8285451 660.988