Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0697 ATGTACTTATCCGATAAGCCCCGCGCAATCGACTTCTACAAAGAAGAAGACACTCGCGACATGATGATTGAGGTCGTCTCTAATGGTGCCGTAACCGCCGTCGGCGGAGGTGGCGGATGCGGCGGCGGAGGAGTAGTTCACCACCCTCACCCTCAGCAGCCGCAGCCTCCCCAACCTCAGCATCAAATCCACCAAATGATCCTCGGTGAAAGCAGCGGCGAAGATCACGAGGTTAAAGCTCCGAAGAAGAGAGCGGAAACGTGGGTACAAGACGAGACTAGGAGCTTGATTTCACTCCGGAGAGAAATGGACGGTCTGTTTAACACCTCTAAATCGAACAAGCATTTGTGGGAACAGATTTCGGCTAAGATGAGGGAAAAGGGGTTTGATCGCTCGCCGACTATGTGTACTGATAAATGGAGGAATTTGCTTAAGGAGTTCAAGAAGGCCAAGCATCAGGATAGAGGAGGAAGTGGGTCTGCTAAGATGTCTTATTACAAGGAGATTGAGGAGATTTTGAGGGAGAGGAGTAAGAATTCGCAGTACAAGAGCCCTACTCCTCCTCCCAAGGTTGATTCCTACATGCAATTCTCCGATAAAGGACTTGAGGATAATGGAATTTCTTTTGGACCTGTGGAAGCTACGGGTAGACCAATATTGAATCTCGAAAGACGTTTGGATCATGATGGGCACCCTCTCGCCATCACTGCAGCGGAGGCAGTTGCAGTAAACGGAGTACCCCCTTGGAACTGGAGAGAGGCCCCTGGAAATGGCGAGGAGAATCAGGCATTTGGTGGGAGGGTCATAACAGTCAAGTGGGGGGAATACACTAGGAGGATCGGGGTTGATGGGTCCTCAGATGCCATCAAGGAGGCAATTAGGTCTGCCTTTCGGTTGAGAACTAAGCGAGCCTTTTGGTTGGAAGATGACGATCAAATAGTCCGGAGTCTTGACAGAGACATGCCTTTGGGGAATTATACTCTTCAACTCGATGAAGGATTAGCCATAAAATTATGCCTCTATGATGAGTCGGACCACTTACCAGTCCACACAGAAGAGAAGATATTTTACACGGAAGATGATTACAGAGATTTCTTGACCCGTCGAGGTTGGACATGTCTTAGAGAGTTTGATGGGTACAGAAACATTGATAACATGGACGATCTTCGCCCTGGTGCTCTATACCGTGGTATGACTTGA 1200 48.83 MYLSDKPRAIDFYKEEDTRDMMIEVVSNGAVTAVGGGGGCGGGGVVHHPHPQQPQPPQPQHQIHQMILGESSGEDHEVKAPKKRAETWVQDETRSLISLRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGGSGSAKMSYYKEIEEILRERSKNSQYKSPTPPPKVDSYMQFSDKGLEDNGISFGPVEATGRPILNLERRLDHDGHPLAITAAEAVAVNGVPPWNWREAPGNGEENQAFGGRVITVKWGEYTRRIGVDGSSDAIKEAIRSAFRLRTKRAFWLEDDDQIVRSLDRDMPLGNYTLQLDEGLAIKLCLYDESDHLPVHTEEKIFYTEDDYRDFLTRRGWTCLREFDGYRNIDNMDDLRPGALYRGMT 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6387898 6392557 + Conep12aG0072000.1 Cone12ag0697 449541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0697 399 ProSiteProfiles Myb-like domain profile. 80 144 IPR001005 -
Cone12ag0697 399 CDD GT1 86 151 - -
Cone12ag0697 399 MobiDBLite consensus disorder prediction 40 62 - -
Cone12ag0697 399 FunFam trihelix transcription factor GT-1 88 150 - -
Cone12ag0697 399 SMART sant 84 146 IPR001005 -
Cone12ag0697 399 PANTHER FI21293P1 53 390 - -
Cone12ag0697 399 Gene3D - 88 150 - -
Cone12ag0697 399 Pfam Myb/SANT-like DNA-binding domain 87 172 IPR044822 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0697 Cone-Chr12:6387898 Cone16ag0970 Cone-Chr16:9673740 3.12E-170 dispersed
Cone12ag0697 Cone-Chr12:6387898 Cone8ag0724 Cone-Chr8:7286476 1.76E-275 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44468 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0697 - - - 0.0