Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0712 ATGGACATCACTGAAATTGAAGAAAATCTATTTGCTGCAAGTGACGCTAAGTTACATGGAGAATTGTGCAAGGTGCTTTCTGCAATTTATTGCAAGGTGCTGTCAATTTTTCCATCCTTGGAAGCGGCACGGCCTAGGAGCAAGTCAGGTATTCAGGCGTTGTGCACATTACATGTAGCCCTTGAGAAGACCAAGAACATCCTTCAACATTGCTCAGCATGTAGCAAACTCTACTTGGCTATAACTGGGGATTCTGTCCTCTCAAAATTTGAGAAGGCTAGATGTGCTTTGGAAGATAGTCTTAGACGTGTAAAAGATATTGTTCCACAATCAATTGGATGTCAGATTCAAGAGATTATTAGTGAAGTTGAACGCACTGTTTTCTCCCTCGATCCATTGGAGAAGCAAGTCGGTGATGACATTATAGGAATGCTCCAGCAAGGAAAAAAATTCAATGACTCTAATGACATCAATGAGCTTGAGTGTTTTCACCAAGCTGCAGTTAGACTTGGAATAACCTCCTCAAGAGCAGCCCTCACAGAAAGAAGAGCACTCAAGAAACACATAGAACGAGCTCGTGCTGAAGATGACAAACGGAAAGAATCAATTGTGGCTTACCTTTTGCATCTCATGAGAAAATATTCCAAGCTATTTAGAAGTGAACTATCAGATGACACTGATTCACAGGGGTCTACTCCTTGCTCACCCACAGTTCAGGGTTCTCTTGAGGAATGCAGGCCTGGAGGAAATGGTCAAGCTTTTGAAAGGCAACTATCAAAGCTCAGTTCTTTTAATTTCAAGCCAAGTAATAAAAGATCCGGGCAGATGCCCCTCCCGCCCGAGGAACTAAGGTGCCCTATATCGTTGCAGCTTATGTACGATCCAGTGATTATAGGTTCGGGCCAAACTTATGAAAGGATTTGCATTGTGAAATGGTTCTGTGATGGACATAGCACTTGCCCAAAGACTCAACAGAATCTCTCTCATCTGTGCTTAACGCCCAACTATTGCGTTAAGGGCCTTATTGCCAGCTGGTGTGAACAAAATGGATTTCCTATTCCAGAGGCCCCCCCAGACAGTCTTGACCTAAATTACTGGAGGCTTGCTTTATCCGAGTCTGATTCAGCAAACTCAAGATCTATGAACAGTGTAGGCACTTCTTACAAATTGAAGGGAGTTAAGGTGGTCCCCTTAGAAGAGGAGTGTGGTATTATTGAAGAGCCCGGATTAAATGAAGTGGATAATATGTCTGCTGATGAGGAAGTAGAGTCTGATTTCAATATTTTCGAAAGATACGGAAATTTTCTAATGGTTTTGAATGGAGAAGAAGATATAAGGAACAAGTGTAAGGTGGTGGAGAAGATAAGGCTCTTGTTGAAGGATGATGAAGAGGCCAGAATTTTCATGGGAGCTAATGGTTTTGTTGAAGCACTTTTGCAGTTTCTAAAATTGGCTGTGCATGAAGGGAACTCTGCAGCTCAGGAAAGTGGAGCTATGGCTCTCTTCAACCTTACTGTCAATAATAACAGAAACAAGGAAATGATGTTAGCAGCTGGTGTGATTTCGTTACTGGAGACAATGACCTTAAATCCAAACTCAGCTGGATCTGCTACAGCCCTATATCTAAACCTCTCCAGCCTTGACGAAGCTAAGCCTATAATTGGTTCAAGTCAAGCTGTTTTTTTCCTAACTGACCTTCTTCAAACTAATCCCGAACCTCTCTGCAAGCAAGATGCTCTCCATGCCCTCTATAATCTCTCTACTATACCCTCCAGTATACCCAATCTACTCTCAGCTGGAATCATAAACGCTCTTCAACCCTTTTTCAATAATCAAACTGACTACTCATGGACCGAAAAATCCATAGCTGTCTTGATAAATTTGGCTTCTACCCAATCAGGTAGAAAAGAAATAGTCTCCTCCCCAAGCCTTATTACTGCTCTCGCTGTAATATTGGATACAGGTGAACCCTTAGAGCAAGAGCAAGCCGTGACTTGTCTTTTGATTTTGTGCAAGGGGAATGAGAAATGCTGTCAGATGGTATTAAGAGAAGGGGTGATTCCTGGATTGGTATCGATTTCTGTTAATGGGACTTTGAGAGGGAAAGAGAAGGCCCAAAAGCTATTAATGGTGTTTAGAAAACAAAGGCAACGAGACCAACCGCCTGCTGAATGGGAGGAAAGTAGTGATAATCTGCCGCCGCCTGGGTTGGAATCAAAGCCACCCTGCAAAACTATTTCCAGAAGGAAAATGGGGAGAGCTTTGAGCTTTTTATGGAAGAGTAAGAGCTTTTCTGTTTATCAGTGTTAA 2310 42.42 MDITEIEENLFAASDAKLHGELCKVLSAIYCKVLSIFPSLEAARPRSKSGIQALCTLHVALEKTKNILQHCSACSKLYLAITGDSVLSKFEKARCALEDSLRRVKDIVPQSIGCQIQEIISEVERTVFSLDPLEKQVGDDIIGMLQQGKKFNDSNDINELECFHQAAVRLGITSSRAALTERRALKKHIERARAEDDKRKESIVAYLLHLMRKYSKLFRSELSDDTDSQGSTPCSPTVQGSLEECRPGGNGQAFERQLSKLSSFNFKPSNKRSGQMPLPPEELRCPISLQLMYDPVIIGSGQTYERICIVKWFCDGHSTCPKTQQNLSHLCLTPNYCVKGLIASWCEQNGFPIPEAPPDSLDLNYWRLALSESDSANSRSMNSVGTSYKLKGVKVVPLEEECGIIEEPGLNEVDNMSADEEVESDFNIFERYGNFLMVLNGEEDIRNKCKVVEKIRLLLKDDEEARIFMGANGFVEALLQFLKLAVHEGNSAAQESGAMALFNLTVNNNRNKEMMLAAGVISLLETMTLNPNSAGSATALYLNLSSLDEAKPIIGSSQAVFFLTDLLQTNPEPLCKQDALHALYNLSTIPSSIPNLLSAGIINALQPFFNNQTDYSWTEKSIAVLINLASTQSGRKEIVSSPSLITALAVILDTGEPLEQEQAVTCLLILCKGNEKCCQMVLREGVIPGLVSISVNGTLRGKEKAQKLLMVFRKQRQRDQPPAEWEESSDNLPPPGLESKPPCKTISRRKMGRALSFLWKSKSFSVYQC 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6553517 6558516 - Conep12aG0073500.1 Cone12ag0712 449556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0712 769 SUPERFAMILY RING/U-box 274 355 - -
Cone12ag0712 769 Coils Coil 175 195 - -
Cone12ag0712 769 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Cone12ag0712 769 Gene3D - 413 721 IPR011989 -
Cone12ag0712 769 Pfam U-box domain 280 349 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone12ag0712 769 MobiDBLite consensus disorder prediction 715 744 - -
Cone12ag0712 769 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Cone12ag0712 769 SUPERFAMILY ARM repeat 442 697 IPR016024 -
Cone12ag0712 769 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone12ag0712 769 MobiDBLite consensus disorder prediction 224 239 - -
Cone12ag0712 769 CDD RING-Ubox_PUB 280 332 IPR045210 -
Cone12ag0712 769 MobiDBLite consensus disorder prediction 223 250 - -
Cone12ag0712 769 SMART Ubox_2 282 345 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone12ag0712 769 PANTHER U BOX DOMAIN-CONTAINING 22 716 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0712 Cone-Chr12:6553517 Cone6ag1628 Cone-Chr6:12536070 6.07E-91 dispersed
Cone12ag0712 Cone-Chr12:6553517 Cone13ag1136 Cone-Chr13:9000613 0 wgd
Cone12ag0712 Cone-Chr12:6553517 Cone19ag1117 Cone-Chr19:8027342 0 wgd
Cone12ag0712 Cone-Chr12:6553517 Cone8ag0740 Cone-Chr8:7457912 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0712 - - - 0.0