Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0714 ATGGGGGACGAGAGGGTTACAGGAGTGGTTCAATGGTTCAACGATTCCAAGGGTTTCGGTTTCATCAAGCCTGATGTAGAAGGTCCAGATCTGTTCGTTCACCAATCCTCGATCAAATCCGAGGGTTATCGTTGCCTCGTTGAGGGCGAGGCCGTCGAATTCGAGATCGCAGCTGGCGATGACGGAAAATCCAAAGCAGTGGAGGTCATTAGCCTCGATGGACAGGGGAGCAAACGTGACAGCTACGATAGTGGAAGAGGAGGAGGCCGTAGCACTGGTGGTGGCTTCGCTGGCGGTTGGAGAGGCGGCGATCGGCGCAACGGAGGTGGCGGATCCGGTGGTTCTGGCTGCTACAACTGCGGGAATGTTGGACATTTGGCTAGGGATTGCAATCGTGTCAGTAATCGCGGCGGTGGTGGCGGCGGAGATTGTTTTGCTTGTGGTGAGGCAGGACACATGGCGAGGGACTGTCCTCGTGGAAGCAGTGGCGGAGGTGGTGGTGGAGCCTGTTATAAATGTGGAGAGTTTGGTCACTTGGCCAGAGACTGCAGTCAGGGAAACGGTGGTGGAGGCGGTGGCGGAGGGAGTTGCTATAGCTGTGGAGAATTTGGCCACCTAGCTAGGGATTGCGCACGAGGAAACAGTGGCAGCGGCGGTGGTGGGAGATTTGGCGGCGGTAGCTCTGGAGCTGGAGGTGGCACCTGCTTCAATTGTGGAGTGGCAGGGCATTTCGCAAGAGAGTGCCCTAATGCTGCTTGA 759 57.05 MGDERVTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSEGYRCLVEGEAVEFEIAAGDDGKSKAVEVISLDGQGSKRDSYDSGRGGGRSTGGGFAGGWRGGDRRNGGGGSGGSGCYNCGNVGHLARDCNRVSNRGGGGGGDCFACGEAGHMARDCPRGSSGGGGGGACYKCGEFGHLARDCSQGNGGGGGGGGSCYSCGEFGHLARDCARGNSGSGGGGRFGGGSSGAGGGTCFNCGVAGHFARECPNAA 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6597626 6598895 - Conep12aG0073700.1 Cone12ag0714 449558

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0714 252 Pfam 'Cold-shock' DNA-binding domain 7 70 IPR002059 GO:0003676(InterPro)
Cone12ag0714 252 ProSiteProfiles Zinc finger CCHC-type profile. 117 130 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0714 252 CDD CSP_CDS 6 69 IPR002059 GO:0003676(InterPro)
Cone12ag0714 252 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676(InterPro)
Cone12ag0714 252 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676(InterPro)
Cone12ag0714 252 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676(InterPro)
Cone12ag0714 252 SUPERFAMILY Retrovirus zinc finger-like domains 216 250 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0714 252 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676(InterPro)
Cone12ag0714 252 SMART csp_8 7 72 IPR011129 GO:0003676(InterPro)
Cone12ag0714 252 ProSiteProfiles Zinc finger CCHC-type profile. 235 250 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0714 252 SUPERFAMILY Retrovirus zinc finger-like domains 136 186 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0714 252 Pfam Zinc knuckle 116 130 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0714 252 Pfam Zinc knuckle 196 210 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0714 252 Pfam Zinc knuckle 169 185 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0714 252 Pfam Zinc knuckle 144 158 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0714 252 Pfam Zinc knuckle 233 250 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0714 252 SUPERFAMILY Nucleic acid-binding proteins 4 71 IPR012340 -
Cone12ag0714 252 SMART c2hcfinal6 234 250 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0714 252 SMART c2hcfinal6 116 132 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0714 252 SMART c2hcfinal6 196 212 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0714 252 SMART c2hcfinal6 169 185 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0714 252 SMART c2hcfinal6 143 159 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0714 252 SUPERFAMILY Retrovirus zinc finger-like domains 185 212 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0714 252 Gene3D - 226 252 - -
Cone12ag0714 252 ProSiteProfiles Zinc finger CCHC-type profile. 170 185 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0714 252 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Cone12ag0714 252 Gene3D - 2 69 IPR012340 -
Cone12ag0714 252 ProSiteProfiles Zinc finger CCHC-type profile. 144 159 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0714 252 ProSiteProfiles Zinc finger CCHC-type profile. 197 210 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0714 252 MobiDBLite consensus disorder prediction 75 105 - -
Cone12ag0714 252 PANTHER COLD SHOCK DOMAIN PROTEIN 2 188 250 - -
Cone12ag0714 252 SUPERFAMILY Retrovirus zinc finger-like domains 102 135 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cone12ag0714 252 Gene3D - 112 138 - -
Cone12ag0714 252 Gene3D - 139 165 - -
Cone12ag0714 252 Gene3D - 192 219 - -
Cone12ag0714 252 Gene3D - 166 191 - -
Cone12ag0714 252 PRINTS Eggshell protein signature 185 195 - -
Cone12ag0714 252 PRINTS Eggshell protein signature 219 237 - -
Cone12ag0714 252 PRINTS Eggshell protein signature 98 109 - -
Cone12ag0714 252 PRINTS Eggshell protein signature 160 175 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0714 K09250 - - csv:101216334 270.781
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0714 Cone-Chr12:6597626 Cone6ag1686 Cone-Chr6:12782102 8.73E-47 dispersed
Cone12ag0714 Cone-Chr12:6597626 Cone8ag0853 Cone-Chr8:8472957 1.57E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1119 Blo04g00883 . . . Bpe15g00473 Bpe13g00413 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0853 Cone12ag0714 Cone6ag1686 . . . . . . . Bda11g01834 . . . Bma03g00959 Bma06g00094 . . . Cma16g01239 . . . . . . . . . . . . . . . . . . . Lsi07g01102 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006925 2 0 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 0 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44469 None None None None Cone TF