Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone12ag0715 | ATGGAAGTAGCAAAAGATCCTACTGTGGCTAGGAAAGTTCAAAAGGCCGATCGAGAAAAGTTAAGGAGGGATCGACTCAATGAGCAGTTCCTTGAGTTGGGAAACACCCTAGATGCAGATCCAGGTAGGCCCAAAAACGACAAGGCAACCATCCTTACGGACACAATCCAAATGCTTAAGGATTCAACTACGGAAGTCAATCGGCTTAAAGCTGAATATGCAACTCTTACAGAAGAATCACGTGAGCTCACACAGGAGAAGAATGAACTTAAAGAAGAGAAGGCTTCGTTAAAATCCGATATTGAGAATCTCAATGTCCAATATCAACGAAGAATGAGGGTTATGTATCCATGGGCTGCCATAGATCCTTCTCTTGTCATGGGCCCACCTTATTCGTACCCACTTCCGATTCCCATGCACCCATCAAGGCATCCATTTCCCTTCTTTGGAAACCAAAACCCCGGTCCCATTCCCAATCCCTGTTCGACTTTTGTTCCATATACTAATGTAGGCCTGGCTAATCATCCAATTAAACAACCTTCATCCCAGCATGCATCGGCTTCAAAACTTTCTGGGAAACATGATCCAAAAAGCAAGCCGTTGGATCGTAATGAGGAAAGATGTGATGAGTCTGCTGATGTGGCAACTGACCTTGAACTTAAGATGCCCGGGTCATCAGCTCTACAGGAGCTGTCTTGTGGGGGTAAGGGCAAGGGGTCATTAGAGAGTAGAAAAATAACTGTTATGGCAAATTCTTCAAGCCGGTACTCTTCATCTTCCCAAGTTGTGCAAGAGTGCTCCTCTAACAGTGTAGGTGATATTCCAAAGGCTAGTAACTGA | 840 | 44.76 | MEVAKDPTVARKVQKADREKLRRDRLNEQFLELGNTLDADPGRPKNDKATILTDTIQMLKDSTTEVNRLKAEYATLTEESRELTQEKNELKEEKASLKSDIENLNVQYQRRMRVMYPWAAIDPSLVMGPPYSYPLPIPMHPSRHPFPFFGNQNPGPIPNPCSTFVPYTNVGLANHPIKQPSSQHASASKLSGKHDPKSKPLDRNEERCDESADVATDLELKMPGSSALQELSCGGKGKGSLESRKITVMANSSSRYSSSSQVVQECSSNSVGDIPKASN | 279 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 6609367 | 6612928 | + | Conep12aG0073800.1 | Cone12ag0715 | 449559 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone12ag0715 | 279 | CDD | bHLH_AtILR3_like | 15 | 91 | - | - | |
Cone12ag0715 | 279 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cone12ag0715 | 279 | MobiDBLite | consensus disorder prediction | 251 | 279 | - | - | |
Cone12ag0715 | 279 | MobiDBLite | consensus disorder prediction | 174 | 211 | - | - | |
Cone12ag0715 | 279 | Coils | Coil | 59 | 107 | - | - | |
Cone12ag0715 | 279 | MobiDBLite | consensus disorder prediction | 174 | 189 | - | - | |
Cone12ag0715 | 279 | SMART | finulus | 16 | 68 | IPR011598 | GO:0046983(InterPro) | |
Cone12ag0715 | 279 | Pfam | Helix-loop-helix DNA-binding domain | 11 | 61 | IPR011598 | GO:0046983(InterPro) | |
Cone12ag0715 | 279 | MobiDBLite | consensus disorder prediction | 190 | 211 | - | - | |
Cone12ag0715 | 279 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 10 | 81 | IPR036638 | GO:0046983(InterPro) | |
Cone12ag0715 | 279 | PANTHER | TRANSCRIPTION FACTOR BHLH121 | 4 | 277 | IPR044579 | GO:0003700(InterPro)|GO:0006879(InterPro) | |
Cone12ag0715 | 279 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 10 | 62 | IPR011598 | GO:0046983(InterPro) | |
Cone12ag0715 | 279 | Gene3D | - | 9 | 113 | IPR036638 | GO:0046983(InterPro) | |
Cone12ag0715 | 279 | Coils | Coil | 9 | 29 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone12ag0715 | Cone-Chr12:6609367 | Cone8ag1264 | Cone-Chr8:10483506 | 2.75E-68 | dispersed | |
Cone12ag0715 | Cone-Chr12:6609367 | Cone8ag0851 | Cone-Chr8:8463240 | 1.89E-130 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
44470 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone12ag0715 | - | - | - | 0.0 |