Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0715 ATGGAAGTAGCAAAAGATCCTACTGTGGCTAGGAAAGTTCAAAAGGCCGATCGAGAAAAGTTAAGGAGGGATCGACTCAATGAGCAGTTCCTTGAGTTGGGAAACACCCTAGATGCAGATCCAGGTAGGCCCAAAAACGACAAGGCAACCATCCTTACGGACACAATCCAAATGCTTAAGGATTCAACTACGGAAGTCAATCGGCTTAAAGCTGAATATGCAACTCTTACAGAAGAATCACGTGAGCTCACACAGGAGAAGAATGAACTTAAAGAAGAGAAGGCTTCGTTAAAATCCGATATTGAGAATCTCAATGTCCAATATCAACGAAGAATGAGGGTTATGTATCCATGGGCTGCCATAGATCCTTCTCTTGTCATGGGCCCACCTTATTCGTACCCACTTCCGATTCCCATGCACCCATCAAGGCATCCATTTCCCTTCTTTGGAAACCAAAACCCCGGTCCCATTCCCAATCCCTGTTCGACTTTTGTTCCATATACTAATGTAGGCCTGGCTAATCATCCAATTAAACAACCTTCATCCCAGCATGCATCGGCTTCAAAACTTTCTGGGAAACATGATCCAAAAAGCAAGCCGTTGGATCGTAATGAGGAAAGATGTGATGAGTCTGCTGATGTGGCAACTGACCTTGAACTTAAGATGCCCGGGTCATCAGCTCTACAGGAGCTGTCTTGTGGGGGTAAGGGCAAGGGGTCATTAGAGAGTAGAAAAATAACTGTTATGGCAAATTCTTCAAGCCGGTACTCTTCATCTTCCCAAGTTGTGCAAGAGTGCTCCTCTAACAGTGTAGGTGATATTCCAAAGGCTAGTAACTGA 840 44.76 MEVAKDPTVARKVQKADREKLRRDRLNEQFLELGNTLDADPGRPKNDKATILTDTIQMLKDSTTEVNRLKAEYATLTEESRELTQEKNELKEEKASLKSDIENLNVQYQRRMRVMYPWAAIDPSLVMGPPYSYPLPIPMHPSRHPFPFFGNQNPGPIPNPCSTFVPYTNVGLANHPIKQPSSQHASASKLSGKHDPKSKPLDRNEERCDESADVATDLELKMPGSSALQELSCGGKGKGSLESRKITVMANSSSRYSSSSQVVQECSSNSVGDIPKASN 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6609367 6612928 + Conep12aG0073800.1 Cone12ag0715 449559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0715 279 CDD bHLH_AtILR3_like 15 91 - -
Cone12ag0715 279 MobiDBLite consensus disorder prediction 1 21 - -
Cone12ag0715 279 MobiDBLite consensus disorder prediction 251 279 - -
Cone12ag0715 279 MobiDBLite consensus disorder prediction 174 211 - -
Cone12ag0715 279 Coils Coil 59 107 - -
Cone12ag0715 279 MobiDBLite consensus disorder prediction 174 189 - -
Cone12ag0715 279 SMART finulus 16 68 IPR011598 GO:0046983(InterPro)
Cone12ag0715 279 Pfam Helix-loop-helix DNA-binding domain 11 61 IPR011598 GO:0046983(InterPro)
Cone12ag0715 279 MobiDBLite consensus disorder prediction 190 211 - -
Cone12ag0715 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 10 81 IPR036638 GO:0046983(InterPro)
Cone12ag0715 279 PANTHER TRANSCRIPTION FACTOR BHLH121 4 277 IPR044579 GO:0003700(InterPro)|GO:0006879(InterPro)
Cone12ag0715 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 10 62 IPR011598 GO:0046983(InterPro)
Cone12ag0715 279 Gene3D - 9 113 IPR036638 GO:0046983(InterPro)
Cone12ag0715 279 Coils Coil 9 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0715 Cone-Chr12:6609367 Cone8ag1264 Cone-Chr8:10483506 2.75E-68 dispersed
Cone12ag0715 Cone-Chr12:6609367 Cone8ag0851 Cone-Chr8:8463240 1.89E-130 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44470 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0715 - - - 0.0