Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0724 ATGGCCAAGTACCATTACTTTGTTTCAACTCTTCTCTTTGTCATTCTCTTCTGTTTAACAACTAGTTTTGGAAAGGAACAATATCTCTACGGTTTGAAGATTAATGCTATTGATCGATGCTGGAGATGGAACCCAAACTGGAGAAAGAACCGCCAACAACTGGCTACATGTTCGGTTGGTTTTGCTGGTAAGATGACCAACAACATAGGAACCGGGCTCGTCCATTATACAGTAACCAATCCTATGGATGATCCGCTAAATCCTAAGCTGGGATCCCTTAGATACGGTGCAACCATGATTAAAAACAAAGTGTGGATCACGTTTTCTCGAGATATGATGATCAGGCTTGACAAACCGCTTCTTATTAGTAGCTTCACTGTGATCGACGGACGAGGCGTGGACGTTCATATTGCAGGTAATGCATGCTTGATGGTGTATAAGGCGAGCAATGTGATCATCCATGGGCTTAAGATCCACCATTGCAAGCCTCAAGGACCCGGTCCAGTGATGGGCCCAGGATCACAGATGTTACAGCTAGGTCAAGTAGATGGGGATGCAATCAGATTAGTTTCCGCATCGAAGATCTGGATAGACCACAACACATTGTATAAATGCCAAGATGGACTCTTGGATGTGACACGCGGGTCGACTGGTATCACCATCTCGAACAATTGGTTCAAGGAACAAGACAGGGTCATGCTTCTCGGACACGATGACGGATACTTGAGGGACAGGAACATGAAGGTGACCGTTGCATATAACCATTTTGGACCCAATTGCAATCAAAGGATGCCAAGGATACGGCACGGATATGCACATGTTGTAAACAACCTCTATCAAGGATGGACACAATATGCAATTGGTGGTAGTATGAATCCTAGCGTTAAGAGTCAAGCCAATCTCTTTATCGCGTCCAAAAATGGAAGGAAGGAGGTGACATGGAACCCGGCAAGCAGCCGGAGTAGTTCAGGCAGGTTTTTCTCTGTGAGGGATGCTTTTGAAAACGGAGCTTCTTTTAATCAAATGTCTCAAGGTGGGGGTGGCGCAAAACCGAACTACCAGCCTCAAGAATGGTTTCAAGTTGCAGATGTGAGTGGTGTTAGAGCCTTGACCAGTTCATCAGGTGCTTTAAGCTGCACAAAACATTCTAGATGTTGA 1158 45.16 MAKYHYFVSTLLFVILFCLTTSFGKEQYLYGLKINAIDRCWRWNPNWRKNRQQLATCSVGFAGKMTNNIGTGLVHYTVTNPMDDPLNPKLGSLRYGATMIKNKVWITFSRDMMIRLDKPLLISSFTVIDGRGVDVHIAGNACLMVYKASNVIIHGLKIHHCKPQGPGPVMGPGSQMLQLGQVDGDAIRLVSASKIWIDHNTLYKCQDGLLDVTRGSTGITISNNWFKEQDRVMLLGHDDGYLRDRNMKVTVAYNHFGPNCNQRMPRIRHGYAHVVNNLYQGWTQYAIGGSMNPSVKSQANLFIASKNGRKEVTWNPASSRSSSGRFFSVRDAFENGASFNQMSQGGGGAKPNYQPQEWFQVADVSGVRALTSSSGALSCTKHSRC 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6660506 6661866 - Conep12aG0074700.1 Cone12ag0724 449568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0724 385 Pfam Pectate lyase 127 302 IPR002022 -
Cone12ag0724 385 PANTHER PECTATE LYASE 18-RELATED 32 381 IPR045032 GO:0030570(InterPro)
Cone12ag0724 385 PRINTS Pollen allergen Amb family signature 263 282 IPR018082 -
Cone12ag0724 385 PRINTS Pollen allergen Amb family signature 324 348 IPR018082 -
Cone12ag0724 385 PRINTS Pollen allergen Amb family signature 183 204 IPR018082 -
Cone12ag0724 385 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Cone12ag0724 385 PRINTS Pollen allergen Amb family signature 356 379 IPR018082 -
Cone12ag0724 385 PRINTS Pollen allergen Amb family signature 119 135 IPR018082 -
Cone12ag0724 385 PRINTS Pollen allergen Amb family signature 57 74 IPR018082 -
Cone12ag0724 385 SMART amb_all 111 308 IPR002022 -
Cone12ag0724 385 Gene3D - 34 378 IPR012334 -
Cone12ag0724 385 SUPERFAMILY Pectin lyase-like 24 377 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0724 Cone-Chr12:6660506 Cone4ag0383 Cone-Chr4:1736681 7.88E-99 dispersed
Cone12ag0724 Cone-Chr12:6660506 Cone8ag0819 Cone-Chr8:8193754 3.29E-83 wgd
Cone12ag0724 Cone-Chr12:6660506 Cone8ag0841 Cone-Chr8:8427211 5.96E-262 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0724 K01728 - csv:101217103 552.362