Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0728 ATGTCTTCCCCAGGCTCTACCTTCAGTGGCGATGAAACCGCTCCGTTCTTCGGCTTCCTCGGCGCAGCGGCTGCCCTAGTTTTTTCCTGTATGGGGGCTGCTTATGGCACAGCGAAGAGTGGAGTTGGGGTGGCGTCCATGGGAGTGATGAGGCCTGAGCTTGTGATGAAGTCGATTGTTCCAGTTGTCATGGCTGGTGTTTTAGGTATTTACGGCTTGATCATTGCTGTGATTATCAGCACAGGGATCAACCCTAAGGCCAAATCGTATTACTTGTTTGATGGCTATGCTCATCTGTCATCTGGCTTAGCTTGTGGTCTTGCTGGTCTTTCTGCCGGTATGGCCATTGGTATCGTTGGAGATGCTGGAGTCAGAGCTAACGCACAGCAGCCAAAGCTTTTTGTTGGAATGATTCTGATTCTCATCTTTGCCGAGGCATTGGCTCTCTATGGTCTAATTGTTGGTATCATCTTATCGTCCCGAGCTGGCCAATCCAGAGCAGATTAG 507 50.1 MSSPGSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6685740 6687624 + Conep12aG0075100.1 Cone12ag0728 449572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0728 168 CDD ATP-synt_Vo_c_ATP6C_rpt1 16 83 - -
Cone12ag0728 168 SUPERFAMILY F1F0 ATP synthase subunit C 17 80 IPR035921 -
Cone12ag0728 168 Pfam ATP synthase subunit C 20 79 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cone12ag0728 168 Pfam ATP synthase subunit C 100 158 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cone12ag0728 168 NCBIfam V-type ATPase subunit C 16 124 IPR011555 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone12ag0728 168 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 6 162 - GO:0016021(PANTHER)
Cone12ag0728 168 FunFam V-type proton ATPase proteolipid subunit 14 165 - -
Cone12ag0728 168 PRINTS Vacuolar ATP synthase 16kDa subunit signature 33 57 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone12ag0728 168 PRINTS Vacuolar ATP synthase 16kDa subunit signature 137 160 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone12ag0728 168 PRINTS Vacuolar ATP synthase 16kDa subunit signature 59 83 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone12ag0728 168 PRINTS Vacuolar ATP synthase 16kDa subunit signature 110 136 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone12ag0728 168 CDD ATP-synt_Vo_c_ATP6C_rpt2 92 159 - -
Cone12ag0728 168 Gene3D - 14 165 IPR035921 -
Cone12ag0728 168 SUPERFAMILY F1F0 ATP synthase subunit C 90 159 IPR035921 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0728 Cone-Chr12:6685740 Cone20ag0095 Cone-Chr20:434877 2.43E-95 dispersed
Cone12ag0728 Cone-Chr12:6685740 Cone8ag0837 Cone-Chr8:8391216 6.14E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0728 K02155 - cit:102619336 285.419