Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0729 ATGGGGTCTGTTGATGGGGACGAAATAATGCAAGGGCCAATTGGCTCTGAGGAGAAAATCTTTGTTTCAGTTCGGTTGAGGCCTTTGAACGAGAGAGAAATCTCAAGGAATGATTTGTCAGATTGGGAATGTATCAATGATAACTCTATCATATTCAGGAACAGCTTTTCAATTCCTGACCGCTCGTACCCAACAGCCTATACATTTGACAGAGTGTTTAGGTGTGATTGTCCAACAAGGAAGGTCTATGAAGAAGGAGCCAAGGAAGTTGCTCTTTCGGTTGTCGGTGGCATTAACTCAACTATTTTTGCATATGGACAAACAAGCAGTGGAAAAACATACACCATGACTGGAATCACCGAGCATACGGTAGAAGATATTTATGGATACATAGAAAAGCATGTGGAAAGAAGGTTCAATTTGAAGCTCTCTGCTATAGAGATCTATAACGAATCTATCAAGGACCTCCTTTGTGCAGATAATACTCCTCTTAGACTCCTTGATGATCCAGAGAGAGGGACCATTGTTGAGAAACTCACAGAGGAACCACTAAGGGACATGGACCATTTTAAACAACTTTTATCTGTCTGTGAATCTCAAAGACAGACAGGGGAAACTTACTTAAATGAAGCGAGCTCTAGATCTCATCAGATTATCAGACTGACAATTGAAAGTTCAGCATGCCAATTTTTGGGTAATGACAAGTCAAGCTCCCTTACAGCAGCAGTGAATTTTGTTGATCTTGCAGGAAGTGAGCGTGCATCCCAGGCGTTATCAGCTGGTGCAAGGTTGAAAGAAGGTTGCCACATAAATCGGAGTTTGCTTACTCTGGGAACTGTTATCCGCAAGCTCAGCAACGGGAAAAATGCACATATTCCTTATAGGGATTCAAAGTTAACCCGCATACTGCAGCCTTCCTTAGGTGGCAATGCTAGAACTGCCATCATCTGCACCATATGTCCTGCAATGAGTCATGTCGAGCAGTCAAGAAACACTCTTTTGTTTGCAAGTAGCGCTAAAGATGTGAGAACCAATGCACAGGTAAATGTAGTAGTGTCTGATAAGGCATTGGTAAAACATCTGCAAAATGAACTGGAAAAATTGCGGTGTGAGTTAAAAAGTGCAGGACAAGCTGCTCTAATGTCTGATTCTGGAGCATTGCTTAGAGAAAAGGATCGTCAGATAAAAAAGCTAAAGGAAGAGGTGAAGGAACTGCAAGAGCAAAGGGACCTTGCTCAATTTGAGGTTAAGGATCTGCTAAAAATGGTTGGAGGCGACAAATCTTCAGTAGCATTGGCAGGATTACATGATTCTTATCCGGAACTAAGAGTACAAACACAGGATTATGAAAATCAATTATTAAATACAACAGCATTGTCGGATTCACACTGCCCAGATGTCAGTGTTCGGTCTTTTGATGCATCTCAGAGTTCAGATGGACCCAGAAGTAGTATTGATGAAAATTTTAATCAACTCTTTAGCTCTGAAGAAAGTTTCCCACGATTCAAGTCATCTGCACAATTATCAGATAGAGCTCCAAATTTTGCTACTATGGAAAGGCAGTTTAATCAAAATCTAGAGGATCACTGCAAGGAAGTTAGATGCATTGAGACGGAAGAGTCAATAGTAGCTAGATGTATAGACTCGAATCTATCAGATTTTAGTCCAACTGGATACCCCGATTCTAACATATCATCACCTATAGAAAACACAGCCACCTCAGGATTGACTGTGGTAGAGAATGCAGAGAAAGATAATTGTGAATTGCCCACTTTGAAGAAAGTGAAAGGATCGAGTAAATACTGTCCCATTTTCGTTATTCCTTCTCCTGATAAACTGTCTCCATGGATATTGGAACAAGATGAGTATGAAGCCTTGAAGTTGACGCGGAGTAAAAGCTCTAAAGCACGTCTTATGACAACCTCAAGCTCAGAGAAGTTAGAAACGAACAAGATTATGGAACAAAGCTGGCGTCAGGAATATTTCACTAGACAGCCTAATGATTTGGAAAATGAACTCGCCCCGTTGAATTTTGTGGGTCTTAATGAAGAGCTCAAAAGGCAGAATGTTTATACACCAACTGATGATAAGTTTACTAGTACCAATACCCCAGTTGCCGGAACAGAGAAAATGGATGACCTTCAATCCGGAAGTCAACTTCTTCATGTCAGGGTACGAGAGACAAAATCAAAGTCAGTTGGATCTGCAGATATTTTAAAAGATATGGGCTTTGAACCAGATCAAAATGATCAACAATGGCCTTCAGAATTCAGGAAGCTTCAGAAGGAGATAATTGAACTTTGGCATGCTTGCAACATCTCATTAGTTCATAGAACTTACTTTTTTCTTCTTTTCACTGGGGACTCCACCGATTCTATTTACATGGAGGTAGAGCTTAGAAGGCTTTCCTTCCTTAGAGACATTTTTTCTCAGGGAAATCATACCGTAGAAGATGGTCAAAGTTTGAATCCAGCAACAAGCATGAAAGCTCTACGTAGTGAGAGGCAGATGTTAAGCAACCAAATGAAGAGGAGGTTTTCTAAACACGAGAGAGAGATTCTTTTCCTAGAGTGGGACATTGACCTGAGTTCGAATCAGAGGAGAATGCAGTTGACCAACCAGCTTTGGACATGTACAAAAAGCATGGAACACATAAGAAAGAGTGCCGATACGGTTTCCAAGATTGTGGGGTATGTTGAACCGGAACAGGCTTTCAAGGAGATGTTTGGTCTCTACTTTACGCCTAGAAAGAAAAGCCAAACTTCTTTCCGTTGGAGACCTAGTGTGAAGGCTCTCTTGTGA 2802 41.08 MGSVDGDEIMQGPIGSEEKIFVSVRLRPLNEREISRNDLSDWECINDNSIIFRNSFSIPDRSYPTAYTFDRVFRCDCPTRKVYEEGAKEVALSVVGGINSTIFAYGQTSSGKTYTMTGITEHTVEDIYGYIEKHVERRFNLKLSAIEIYNESIKDLLCADNTPLRLLDDPERGTIVEKLTEEPLRDMDHFKQLLSVCESQRQTGETYLNEASSRSHQIIRLTIESSACQFLGNDKSSSLTAAVNFVDLAGSERASQALSAGARLKEGCHINRSLLTLGTVIRKLSNGKNAHIPYRDSKLTRILQPSLGGNARTAIICTICPAMSHVEQSRNTLLFASSAKDVRTNAQVNVVVSDKALVKHLQNELEKLRCELKSAGQAALMSDSGALLREKDRQIKKLKEEVKELQEQRDLAQFEVKDLLKMVGGDKSSVALAGLHDSYPELRVQTQDYENQLLNTTALSDSHCPDVSVRSFDASQSSDGPRSSIDENFNQLFSSEESFPRFKSSAQLSDRAPNFATMERQFNQNLEDHCKEVRCIETEESIVARCIDSNLSDFSPTGYPDSNISSPIENTATSGLTVVENAEKDNCELPTLKKVKGSSKYCPIFVIPSPDKLSPWILEQDEYEALKLTRSKSSKARLMTTSSSEKLETNKIMEQSWRQEYFTRQPNDLENELAPLNFVGLNEELKRQNVYTPTDDKFTSTNTPVAGTEKMDDLQSGSQLLHVRVRETKSKSVGSADILKDMGFEPDQNDQQWPSEFRKLQKEIIELWHACNISLVHRTYFFLLFTGDSTDSIYMEVELRRLSFLRDIFSQGNHTVEDGQSLNPATSMKALRSERQMLSNQMKRRFSKHEREILFLEWDIDLSSNQRRMQLTNQLWTCTKSMEHIRKSADTVSKIVGYVEPEQAFKEMFGLYFTPRKKSQTSFRWRPSVKALL 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6687971 6693657 - Conep12aG0075200.1 Cone12ag0729 449573

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0729 933 PANTHER CENTROMERE PROTEIN E 16 921 IPR027640 GO:0003777(InterPro)|GO:0007018(InterPro)
Cone12ag0729 933 Coils Coil 351 378 - -
Cone12ag0729 933 FunFam Kinesin-like protein 13 373 - -
Cone12ag0729 933 Pfam Domain of unknown function (DUF3490) 756 916 IPR021881 -
Cone12ag0729 933 CDD KISc_CENP_E 19 342 - -
Cone12ag0729 933 SMART kinesin_4 17 350 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone12ag0729 933 Pfam Kinesin motor domain 25 342 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone12ag0729 933 Gene3D Kinesin motor domain 13 373 IPR036961 -
Cone12ag0729 933 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 367 IPR027417 -
Cone12ag0729 933 PRINTS Kinesin heavy chain signature 292 313 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone12ag0729 933 PRINTS Kinesin heavy chain signature 97 118 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone12ag0729 933 PRINTS Kinesin heavy chain signature 206 223 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone12ag0729 933 PRINTS Kinesin heavy chain signature 242 260 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone12ag0729 933 ProSiteProfiles Kinesin motor domain profile. 19 342 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone12ag0729 933 Coils Coil 381 422 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0729 K11498 - - mdm:114822745 1034.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0729 Cone-Chr12:6687971 Cone9ag1592 Cone-Chr9:11412526 0 dispersed
Cone12ag0729 Cone-Chr12:6687971 Cone6ag1670 Cone-Chr6:12695803 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1085 . . . . . . . . Cmo04g00793 . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0729 Cone6ag1670 Cone9ag1592 . . Chy07g01228 . Blo05g00823 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00582 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005179 0 5 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 0 1 1 6 1 1 40