Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0733 ATGGGTCGGGGAAAGGTTGAGATCAAGAGGATTGAGAATAGAACAAACAGGCAGGTCACTTACTCAAAGCGGCGTAATGGGCTTCTTAAGAAAGCTAGAGAACTCACCGTTTTATGTGATGCTAAGGTTTCTATCCTTATGTTCTCTAACACTGGAAAATTCCATGAGTTCATTAGTCCTTCTATCTCACATAAGAAGATCTATGATCAGTATCAGAAGAATATGTTGATTGACCTCTGGAGACCCCACTATGAGAGGATGCAAGAAAATCTAGGGAAACTGAAGGAAATCAACTTCAAACTGAGAAGAGAAATCGGGCAGAGGATAGGTGAAGATTTGGGCGATCTGAGGTTTGACGAACTACAAGGCCTTGAGCAAGAGATGTCTTCTGCCGTGCAGGAAATTCGCCAACGAAGGGATCACGTCCTCATTAGTCAGACGAATAAGTTCGGAAAAAAGGTCAAAAACTTGGAGCAAGTACATAAAAATCTCCTTCTCAACTTGGAAGGAAAATATGATGAGCTGCAATATGGGTGCGTGGAAAATGGGAGGGAGTATGAATCTGGAATTGGCGTCGAGGCGAACGACGGAGGAGGACCGAATCTGTACGGTTTCCATCTCGAGCATGCTCATCACCCCGACCTTCATCATGGAGCTGGTGGAATGATTTCTCATGATCTGCGACTTGCTTGA 693 44.3 MGRGKVEIKRIENRTNRQVTYSKRRNGLLKKARELTVLCDAKVSILMFSNTGKFHEFISPSISHKKIYDQYQKNMLIDLWRPHYERMQENLGKLKEINFKLRREIGQRIGEDLGDLRFDELQGLEQEMSSAVQEIRQRRDHVLISQTNKFGKKVKNLEQVHKNLLLNLEGKYDELQYGCVENGREYESGIGVEANDGGGPNLYGFHLEHAHHPDLHHGAGGMISHDLRLA 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6743461 6744883 - Conep12aG0075600.1 Cone12ag0733 449577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0733 230 ProSiteProfiles K-box domain profile. 84 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone12ag0733 230 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cone12ag0733 230 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone12ag0733 230 Pfam K-box region 83 166 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cone12ag0733 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone12ag0733 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 164 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cone12ag0733 230 Coils Coil 84 104 - -
Cone12ag0733 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone12ag0733 230 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone12ag0733 230 Coils Coil 121 141 - -
Cone12ag0733 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone12ag0733 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone12ag0733 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone12ag0733 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cone12ag0733 230 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0733 K09264 - - vvi:100233014 292.737
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0733 Cone-Chr12:6743461 Cone4ag1947 Cone-Chr4:13734288 2.27E-34 dispersed
Cone7ag1502 Cone-Chr7:10493014 Cone12ag0733 Cone-Chr12:6743461 6.70E-32 transposed
Cone12ag0733 Cone-Chr12:6743461 Cone8ag0833 Cone-Chr8:8345059 9.60E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1067 . . Bda04g00032 Bda10g00169 . . Bma09g00098 . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0833 Cone12ag0733 . . . . . . Blo05g00715 . . . Bpe10g00142 Bpe06g00030 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003277 3 1 2 5 4 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 3 1 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44472 PF03169 OPT 1.00E-137 No_clan Cone TF