Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone12ag0735 | ATGATGATGACATCGGGGAGGTCGGGATCATATTCATCCGGGACAGGAGGAGGAGGTGGTGGGGTCAGCTGCCAAGATTGTGGGAATCAGGCGAAGAAGGATTGTGTGCATATGAGATGTCGGACTTGTTGTAAGAGCCGAGGGTTCGACTGTCAGACCCACGTTAAGAGCACTTGGGTTCCTGCTTCTAAGCGAAGAGAGCGCCAAGCTCAAGCTCAGGACCAGCAAGTAGTTGAGGTCCGAGCAGGAGGAGAGAATATTCCGAAGAGGCAGAGAGAGAATCAGAATATTCCAATTACTGGTGCTGCTGCTCATGATCACTCTACTTCTCATGATCTAGTTGCACCCATAAACAATGCGTCGTCAGGGTTGGAGTTAGTGGGGAACTTTCCGGCAGAAGTGAGCTCGAATGCAGTTTTCCGGTGCGTAAGAATGAGCTCCATTGAGGAGAATGATCGGGACCAGTACGCATATCAGACGGCAGTGAATATAGGAGGGCATGTGTTCAAGGGTATCCTCTACGATCAAGGCCCTCACTATAATGATCATCCGACTAATTATAATTACAATTCTCTCCCTGGTGGTGGTGGTGGTGGTGGAGGCGGAGATTCCTCTTCTGGCGGTGGCAGCGGCGGTACTGCTGGTATCCAACCACTAAATCTCACCACCACCACCCCCGCTACCGCAAGTGGTAGTGGTGGTGGTGTTGGTGGTTCCACTTCATACCTTGATTCTTCTTTATATCCTCCCACTCCGCTTAACAGTTTCATGGGTGCCGGTACGCAATTCTTCCTTCCACCAAGGTCTAATTAG | 813 | 50.68 | MMMTSGRSGSYSSGTGGGGGGVSCQDCGNQAKKDCVHMRCRTCCKSRGFDCQTHVKSTWVPASKRRERQAQAQDQQVVEVRAGGENIPKRQRENQNIPITGAAAHDHSTSHDLVAPINNASSGLELVGNFPAEVSSNAVFRCVRMSSIEENDRDQYAYQTAVNIGGHVFKGILYDQGPHYNDHPTNYNYNSLPGGGGGGGGGDSSSGGGSGGTAGIQPLNLTTTTPATASGSGGGVGGSTSYLDSSLYPPTPLNSFMGAGTQFFLPPRSN | 270 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 6778231 | 6779547 | + | Conep12aG0075800.1 | Cone12ag0735 | 449579 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone12ag0735 | 270 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 8 | 263 | IPR007818 | GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER) | |
| Cone12ag0735 | 270 | MobiDBLite | consensus disorder prediction | 184 | 236 | - | - | |
| Cone12ag0735 | 270 | Pfam | Domain of unknown function (DUF702) | 21 | 179 | - | - | |
| Cone12ag0735 | 270 | MobiDBLite | consensus disorder prediction | 206 | 236 | - | - | |
| Cone12ag0735 | 270 | NCBIfam | putative zinc finger domain, LRP1 type | 23 | 65 | IPR006510 | - | |
| Cone12ag0735 | 270 | ProSiteProfiles | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 24 | - | - | |
| Cone12ag0735 | 270 | NCBIfam | LRP1 C-terminal domain | 130 | 178 | IPR006511 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone12ag0735 | Cone-Chr12:6778231 | Cone9ag1584 | Cone-Chr9:11367151 | 1.36E-62 | dispersed | |
| Cone12ag0735 | Cone-Chr12:6778231 | Cone8ag0832 | Cone-Chr8:8313349 | 5.98E-138 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 44473 | PF00069 | Pkinase | 6.90E-52 | CL0016 | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone12ag0735 | K27807 | - | csv:101207689 | 226.098 |