Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0735 ATGATGATGACATCGGGGAGGTCGGGATCATATTCATCCGGGACAGGAGGAGGAGGTGGTGGGGTCAGCTGCCAAGATTGTGGGAATCAGGCGAAGAAGGATTGTGTGCATATGAGATGTCGGACTTGTTGTAAGAGCCGAGGGTTCGACTGTCAGACCCACGTTAAGAGCACTTGGGTTCCTGCTTCTAAGCGAAGAGAGCGCCAAGCTCAAGCTCAGGACCAGCAAGTAGTTGAGGTCCGAGCAGGAGGAGAGAATATTCCGAAGAGGCAGAGAGAGAATCAGAATATTCCAATTACTGGTGCTGCTGCTCATGATCACTCTACTTCTCATGATCTAGTTGCACCCATAAACAATGCGTCGTCAGGGTTGGAGTTAGTGGGGAACTTTCCGGCAGAAGTGAGCTCGAATGCAGTTTTCCGGTGCGTAAGAATGAGCTCCATTGAGGAGAATGATCGGGACCAGTACGCATATCAGACGGCAGTGAATATAGGAGGGCATGTGTTCAAGGGTATCCTCTACGATCAAGGCCCTCACTATAATGATCATCCGACTAATTATAATTACAATTCTCTCCCTGGTGGTGGTGGTGGTGGTGGAGGCGGAGATTCCTCTTCTGGCGGTGGCAGCGGCGGTACTGCTGGTATCCAACCACTAAATCTCACCACCACCACCCCCGCTACCGCAAGTGGTAGTGGTGGTGGTGTTGGTGGTTCCACTTCATACCTTGATTCTTCTTTATATCCTCCCACTCCGCTTAACAGTTTCATGGGTGCCGGTACGCAATTCTTCCTTCCACCAAGGTCTAATTAG 813 50.68 MMMTSGRSGSYSSGTGGGGGGVSCQDCGNQAKKDCVHMRCRTCCKSRGFDCQTHVKSTWVPASKRRERQAQAQDQQVVEVRAGGENIPKRQRENQNIPITGAAAHDHSTSHDLVAPINNASSGLELVGNFPAEVSSNAVFRCVRMSSIEENDRDQYAYQTAVNIGGHVFKGILYDQGPHYNDHPTNYNYNSLPGGGGGGGGGDSSSGGGSGGTAGIQPLNLTTTTPATASGSGGGVGGSTSYLDSSLYPPTPLNSFMGAGTQFFLPPRSN 270
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 6778231 6779547 + Conep12aG0075800.1 Cone12ag0735 449579
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0735 270 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 8 263 IPR007818 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0045893(PANTHER)
Cone12ag0735 270 MobiDBLite consensus disorder prediction 184 236 - -
Cone12ag0735 270 Pfam Domain of unknown function (DUF702) 21 179 - -
Cone12ag0735 270 MobiDBLite consensus disorder prediction 206 236 - -
Cone12ag0735 270 NCBIfam putative zinc finger domain, LRP1 type 23 65 IPR006510 -
Cone12ag0735 270 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Cone12ag0735 270 NCBIfam LRP1 C-terminal domain 130 178 IPR006511 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0735 Cone-Chr12:6778231 Cone9ag1584 Cone-Chr9:11367151 1.36E-62 dispersed
Cone12ag0735 Cone-Chr12:6778231 Cone8ag0832 Cone-Chr8:8313349 5.98E-138 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44473 PF00069 Pkinase 6.90E-52 CL0016 Cone TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0735 K27807 - csv:101207689 226.098