Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0745 ATGAATTCATCGTCCACCCAATTTGTTGCCGCAAGAAGAATGGAAGTTTATGAACCTATCCACCAGTTTGGCATGTGGGAGGAAAACTTCAAATGTAATAGTAATCTCCACACATCTGCAACCCTGATCATGGAGGCGGACACAAAACTAGATGATCATTCAGATAATGCTTCACTTGGGTCAATGGGACTTCCTCATAAGTATGAGCAAGAAGCAACTAGACCAAATGATAAGACACTAAGAAGGCTTGCACAAAACCGGGAGGCAGCTCGTAAAAGCCGCCAGCGAAAAAAGGCCTATGTTCAGCAATTAGAAAAAAGCCGCTTGAAGCTGGTTCAATTAGAGCAGGAGCTTGAGAAAACAAGACAACAAGGTGTTTATGCTGGCGGTGCATTTGATGCTAATCTGCTGGGATTCTCTGGAGCCATAAATTCAGGTGTGACCACATTTGAGATGGAGTATAGACATTGGGTGGAGAAGCAAAACATGCAGATCAGCGAGCTGAGAACTGCTTTACATGCTGATATATCTGATAGAGAGCTTGACATGCTTGTGAAAAGTTGTTTGGATCATTATTATGACCTTTTCCGATTGAAAGCAATAGCTGCAAAATCCGACGTCTTTTATGTATTATATGGAATGTGGAAAACACCTGTTGAAAGATTTTTCTTCTGGATTGGAGGATTTCGCCCTTCAGAGATCCTTAAGGTTCTCGAGCCTCAGCTTGATACATTGACCGAACAACAACATATAGATGTCAAAAAACTTACACAATCATGTCAGCAAGCAGAAGACGCTCTTCGGCAAGGTATGGACAAACTCCAGCAAACCCTAACTGATAGTATAGTGGCTGGTCGGCTTGGTGATGGAAGTTATCCCATTCAGATGTCTACTGCAATGGAGAGGCTAGAAGCTCTGGTCAGCTTTGTAAATCAGGCAGACAACCTCAGACAGGTAACACTGCAACAGATGAAGAAAATTTTATCGATCCGGCAGTCAGCCCATGGCTTACTAGTACTGGGGGACTACTTCCATAGACTCAGAGCCTTGAGCTTGGTTTGGGCTAATTGTGCAGATCATCAAGGTGTGCCGCTCTGCCTATCGCGTAATATGGTACTGTGA 1122 43.58 MNSSSTQFVAARRMEVYEPIHQFGMWEENFKCNSNLHTSATLIMEADTKLDDHSDNASLGSMGLPHKYEQEATRPNDKTLRRLAQNREAARKSRQRKKAYVQQLEKSRLKLVQLEQELEKTRQQGVYAGGAFDANLLGFSGAINSGVTTFEMEYRHWVEKQNMQISELRTALHADISDRELDMLVKSCLDHYYDLFRLKAIAAKSDVFYVLYGMWKTPVERFFFWIGGFRPSEILKVLEPQLDTLTEQQHIDVKKLTQSCQQAEDALRQGMDKLQQTLTDSIVAGRLGDGSYPIQMSTAMERLEALVSFVNQADNLRQVTLQQMKKILSIRQSAHGLLVLGDYFHRLRALSLVWANCADHQGVPLCLSRNMVL 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6847559 6851722 + Conep12aG0076800.1 Cone12ag0745 449589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0745 373 CDD bZIP_HBP1b-like 78 130 - -
Cone12ag0745 373 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 120 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0745 373 Coils Coil 97 124 - -
Cone12ag0745 373 PANTHER TRANSCRIPTION FACTOR TGA9 1 357 - -
Cone12ag0745 373 Pfam bZIP transcription factor 77 120 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0745 373 SMART brlzneu 74 138 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0745 373 MobiDBLite consensus disorder prediction 54 73 - -
Cone12ag0745 373 Coils Coil 253 273 - -
Cone12ag0745 373 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone12ag0745 373 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone12ag0745 373 Pfam Seed dormancy control 164 239 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cone12ag0745 373 Gene3D - 77 126 - -
Cone12ag0745 373 FunFam BZIP family transcription factor 77 126 - -
Cone12ag0745 373 SUPERFAMILY Leucine zipper domain 78 121 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0745 Cone-Chr12:6847559 Cone20ag0480 Cone-Chr20:2568276 3.73E-108 dispersed
Cone12ag0745 Cone-Chr12:6847559 Cone8ag0792 Cone-Chr8:7958365 8.72E-235 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44474 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0745 K14431 - mdm:103416129 477.248