Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0747 ATGAGTTCGTCACCGCCATCACAAGATTCATCTTCCCCTCCATCACCACCCACACCGCCGCCTCCAAAGGATTCATCTTCATCATCCCCACCACAAAACTCCCCGCCCTCATCACCACCTCCTTCACCTTCTAAGCAAGATTCACCATCGCCGCCACCTCCATCACCTCTTAAGCAAGATTCACCCTCGCAGCCTTCTCCACAATCCTCTCCGCCACCACCACCCTCTCAACAATCCTCACCGCCACCACCTAACTCAAGTTCTAACAATAAATCACCTTCCCCTCCACCACCACCACCACCACCACCACGACAATCCAACTCACCCAATCATAGACCGCCAACTCCTCATTCTCGAGCACCTCCAACTCCTCGTCTATCTTCACCTAAATCATCACATAAAGAGAGTTCATCGTCCTCAACCCCTAGCACAACTGTAATAGGGGCAGCGATCGGCGGGGCGGTATTTCTAATTTTATTGTTCATCATAATGTGCGTTGTAATTTGCTCGCCAAAGAAGAAGAGGAAGAAATCACATGAATATTTCGGATCTAATAGATCTGGGGGTGATTATTACAGCAGTTCTCAGCAGCAAATGCTATGGCACAATAGTTCCCATGGTGGCAACCAGTACAGATTACAACAACAAGTTGGGCCGGGTGGCTCACCGGGCGGTATATGCCTTTCGCCTCCACCTCCAATGGCACCAAGTAGTGAAATGAGTTCATATTACTCAGGCCCTCATCAAAACCCGTTGCCGCCTCCTCCACCTCCAAATTATTCACTAGGAATGAGCCAAAGCAGTTTCTCGTACGAAGAGTTAGCGGCCGCAACAGGAGGCTTTTCTCAAGGCAATTTGTTGGGTCAAGGAGGGTTTGGTTATGTACATAAGGGAGTTTTGCCTAATGGAAAGGAAGTTGCGGTGAAGAGTCTCAAGTCGGGTAGTGGGCAAGGAGAGAGAGAGTTTCAAGCAGAGGTTGAGATTATTAGCAGAGTTCATCATCGACATCTTGTGTCTCTTGTCGGATATTGCATTTCCGGCAGGATTCGAATGTTGGTTTATGAATTTGTTCCAAATGGCACAATGGAACATCACCTTCATGAGCGGCCACAATCAGAACCGCCTCTTGATTGGCCAACCAGGAAGAGAGTTGCATTAGGTTCTGCAAGGGGCCTTTCTTATTTACATGATCACTGTGATCCGAAAATCATACATCGAGATGTCAAAGCTGCAAATATCTTGCTGGATGAGGAGTTTGAGGCGGTTGTTGGCGACTTTGGATTGGCTAAACTAATTGACTACAAGGACACTCATGTGACAACAGCTGTGCATGGGACCATTGGGCATATAGTGCCAGAGTATCTCTCGACTGGAAAGTCGTCTGAGAAGACAGATGTTTTTGGTTATGGGATTATGCTCTTGGAGCTCATAACTGGGCAGAGGGCATTTGATCTTGCTCGTCTTGCAAATGATGATGATGATGATGTTATGCTGCTTGATTGGGGAATTCTAAAAGAGAAGAAGCTGGAGATGCTAGTTGATCCTGACCTGCACGACAATTATGTGGATTCTGAAGTTGAGCAGTTAATCCAAATAGCACTTCTCTGCACCCAAAGCTCGCCCATGGACCGGCCTAAGATGTCTGAGGTGGTAAGTATGCTCCAAAGAGACGGATTGGCTGAGAAGTGGAGCAAGTGGGGAGCAGATCGAGATTGTGTACCACGACATCATATTGGCTTTGGCTCAGAATTCTGA 1755 47.58 MSSSPPSQDSSSPPSPPTPPPPKDSSSSSPPQNSPPSSPPPSPSKQDSPSPPPPSPLKQDSPSQPSPQSSPPPPPSQQSSPPPPNSSSNNKSPSPPPPPPPPPRQSNSPNHRPPTPHSRAPPTPRLSSPKSSHKESSSSSTPSTTVIGAAIGGAVFLILLFIIMCVVICSPKKKRKKSHEYFGSNRSGGDYYSSSQQQMLWHNSSHGGNQYRLQQQVGPGGSPGGICLSPPPPMAPSSEMSSYYSGPHQNPLPPPPPPNYSLGMSQSSFSYEELAAATGGFSQGNLLGQGGFGYVHKGVLPNGKEVAVKSLKSGSGQGEREFQAEVEIISRVHHRHLVSLVGYCISGRIRMLVYEFVPNGTMEHHLHERPQSEPPLDWPTRKRVALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLIDYKDTHVTTAVHGTIGHIVPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDDDVMLLDWGILKEKKLEMLVDPDLHDNYVDSEVEQLIQIALLCTQSSPMDRPKMSEVVSMLQRDGLAEKWSKWGADRDCVPRHHIGFGSEF 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6856057 6932375 - Conep12aG0077000.1 Cone12ag0747 449591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0747 584 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 112 559 IPR047117 -
Cone12ag0747 584 Gene3D Phosphorylase Kinase; domain 1 259 356 - -
Cone12ag0747 584 MobiDBLite consensus disorder prediction 124 144 - -
Cone12ag0747 584 SMART serkin_6 281 554 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0747 584 MobiDBLite consensus disorder prediction 1 144 - -
Cone12ag0747 584 MobiDBLite consensus disorder prediction 201 264 - -
Cone12ag0747 584 MobiDBLite consensus disorder prediction 9 123 - -
Cone12ag0747 584 Gene3D Transferase(Phosphotransferase) domain 1 357 572 - -
Cone12ag0747 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag0747 584 MobiDBLite consensus disorder prediction 201 217 - -
Cone12ag0747 584 ProSiteProfiles Protein kinase domain profile. 281 559 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone12ag0747 584 SUPERFAMILY Protein kinase-like (PK-like) 257 554 IPR011009 -
Cone12ag0747 584 ProSitePatterns Protein kinases ATP-binding region signature. 287 309 IPR017441 GO:0005524(InterPro)
Cone12ag0747 584 Pfam Protein tyrosine and serine/threonine kinase 284 554 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone12ag0747 584 FunFam Somatic embryogenesis receptor-like kinase 1 357 572 - -
Cone12ag0747 584 FunFam proline-rich receptor-like protein kinase PERK1 259 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0747 Cone-Chr12:6856057 Cone20ag0684 Cone-Chr20:4226198 2.91E-146 dispersed
Cone12ag0747 Cone-Chr12:6856057 Cone8ag0793 Cone-Chr8:7971620 6.15E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81961 PF00069 Pkinase 8.40E-60 CL0016 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0747 K13418 - vvi:100247683 424.091