Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0748 ATGAGATATAGGGTTTCGTATTTGATGGACGAGATCTGGGAGCGAGCCGTGGAGACGGCTCTTGACGGCCAAACGGACCACACCTCCGCTCGAACCCTAACCCTAGACGGCGCAGTCAAGTGTGCTCAAGGGCGGTTACCACCTCCTAGCCTACTTGAAAAGTTCCAGAACCTTCAGCACCTTTCCATTGCAAACATAGGCGTCTCGTCGCTTGAGCAGTTCCCTCGTCTAAGGAATCTTCAAAAACTCATTCTCTCTGACAATAGGATTGCCGGTGGCCTTGAGTTTCTAGTAGAAGCAGGGCTTGAATCATTAAGAGACCTTGACCTTTCAAACAATCGGATTCAGTATATAGAAGAGCTCGCCCCTCTTGCAGAGCTGAAGCTTGTTTCATTGGATCTTTACGAATGTCCGGTTACTAGGGTTAAGGATTATCGATCTAGGGTTTTTGGTTTGATTAAATCGCTCAAGTATTTGGATAAGATGGATTCTGATGAAAATGAGCGGCCGGAGTCTGATGATGAGGAGGAAGAGGAAGAGGATGAGGAGGATGATCCTGGAAGTGGTGAAATCGATGGAGAGGATCGACCATATGGGATGATGAATGGGCATAGAGAAGTGATTGAGGGGATTGTTGATGTAGATGAGGATGAAGAGAGTGATGCTGATGAGGAGGAGACTGAGACAGCCAGAGGGGTTAATGGAGTAAATCATCAGGCTGACGTTTTTCATGTTTCTCCCGTGCAGGGAGAAGACAGGGATGGGGAGGAAGAGGATGATGAAGATAATGAATCTGGAGAGGAAATCGATGAAGAGGACAGGGATGATGATGATGATGATGTAGTTGAGGTCCATGAGATTGAGGACAGTGATGAAGAAGATGGGGTTGAGTATGATGAAGATGATGAGGAGGAGGATGAGGAGGAGGAAGAGGAGGAAGTGGATAATGATGAGGGTGACTTGGCGGTGCCAGAGATTACTGGGAAATTGACGAGCACAGAGGGGGAGATTGATGGACATGAGCAGGGAGAGGATGATGGTGATGAAGATGATAATGGAGAGACTGGTGAGGAAGAGCAGGGTATTGACGAAGATGGAGAGTTTGAAGATGAGGAAGAGGAAGAAGACTATGGTGCTGGGTACTTGGTTCAACCAGTGGTACAGGCAGTAGATGATGTTGGAGGTAGTGACATGGATGCAGGAAATGATGAAGAAGATGATGAGGAAGAGGAAGAAGTTGAAGACGATGATGAAGTTTCAATGCTGCAGCAGCATCCCTCTTCTCTCAAGAGGAAGAGAGATGGAAATATAGATGAAGAAGATGATGATGGTGAAGATGATGGCGATGATGGCGATGATGGTGATGATGGCGATGATGAAGACGATTACAGCAAACCATCCAAAAAGCATCATTAG 1416 46.68 MRYRVSYLMDEIWERAVETALDGQTDHTSARTLTLDGAVKCAQGRLPPPSLLEKFQNLQHLSIANIGVSSLEQFPRLRNLQKLILSDNRIAGGLEFLVEAGLESLRDLDLSNNRIQYIEELAPLAELKLVSLDLYECPVTRVKDYRSRVFGLIKSLKYLDKMDSDENERPESDDEEEEEEDEEDDPGSGEIDGEDRPYGMMNGHREVIEGIVDVDEDEESDADEEETETARGVNGVNHQADVFHVSPVQGEDRDGEEEDDEDNESGEEIDEEDRDDDDDDVVEVHEIEDSDEEDGVEYDEDDEEEDEEEEEEEVDNDEGDLAVPEITGKLTSTEGEIDGHEQGEDDGDEDDNGETGEEEQGIDEDGEFEDEEEEEDYGAGYLVQPVVQAVDDVGGSDMDAGNDEEDDEEEEEVEDDDEVSMLQQHPSSLKRKRDGNIDEEDDDGEDDGDDGDDGDDGDDEDDYSKPSKKHH 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6935022 6938442 - Conep12aG0077100.1 Cone12ag0748 449592

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0748 471 MobiDBLite consensus disorder prediction 397 418 - -
Cone12ag0748 471 PANTHER ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32 14 278 IPR045081 GO:0005634(PANTHER)|GO:0042393(PANTHER)
Cone12ag0748 471 SUPERFAMILY L domain-like 47 165 - -
Cone12ag0748 471 MobiDBLite consensus disorder prediction 252 320 - -
Cone12ag0748 471 MobiDBLite consensus disorder prediction 212 226 - -
Cone12ag0748 471 Coils Coil 300 320 - -
Cone12ag0748 471 MobiDBLite consensus disorder prediction 167 190 - -
Cone12ag0748 471 Gene3D Ribonuclease Inhibitor 13 178 IPR032675 -
Cone12ag0748 471 ProSiteProfiles Leucine-rich repeat profile. 104 125 IPR001611 GO:0005515(InterPro)
Cone12ag0748 471 MobiDBLite consensus disorder prediction 439 460 - -
Cone12ag0748 471 FunFam acidic leucine-rich nuclear phosphoprotein 32-related protein-like 13 175 - -
Cone12ag0748 471 MobiDBLite consensus disorder prediction 162 471 - -
Cone12ag0748 471 Pfam Leucine-rich repeat 66 172 - -
Cone12ag0748 471 MobiDBLite consensus disorder prediction 339 378 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0748 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0748 Cone-Chr12:6935022 Cone8ag0802 Cone-Chr8:8063015 1.92E-205 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g950 . . Bda04g00056 Bda10g00127 . . Bma09g00073 Bma15g01001 . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0802 Cone12ag0748 . . . . . . Blo05g00791 Blo06g00131 . . . Bpe06g00048 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015391 2 0 2 2 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 12