Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone12ag0756 ATGGATAATCAAGTAGATAATCAAGATATTGTACTAGTGTCGCAGATGTGCCAACCTTTATATACCCAAATGCTACCTCAACAAGGAAATGGTGAGGAGAAGCGAAGACGGCGGCGTAAGAAGAACAAGGGAGGAGAAGGTGGTGTGGTCGGGTTAAAGAAGAGGAAACTCAGCGAGGAGCAAGTGAGCCTCCTAGAATTGAATTTTGGTAATGAGCATAAGTTAGAGTCCGACAGGAAAGATCGGTTGGCTTCCGAACTCGGCCTCGATCCGCGGCAAGTTGCCGTTTGGTTTCAAAACCGGCGGGCCCGTTGGAAGAACAAGAAACTCGAGGGGGAGTACTCCATTTTGAAGAAACACCATGATTCCGCTGTCGTGGACAAATGTCGACTTGAATCTGAGATATTGAAGCTGAAGGACAAGCTCTTAGAAGCAGAGAAGCAGATCCAACGGCTGTCAGAGCGTTGCCATCATCATCATCAGCACGATGGGGCATCAAGCCATAGTCCGAGCTCATCATTCTCGATGGATGCTAATGCTATGGAACCGCCGTTTCCAGTGGAGTTTGTGGTGCAGGAAACTGGATATGAGCACCCAGTTTTCTACATGTCGGATAATAATTATAGTCAAGGCTTGGAATATTTTAACTTGTTCGGTTGA 660 46.82 MDNQVDNQDIVLVSQMCQPLYTQMLPQQGNGEEKRRRRRKKNKGGEGGVVGLKKRKLSEEQVSLLELNFGNEHKLESDRKDRLASELGLDPRQVAVWFQNRRARWKNKKLEGEYSILKKHHDSAVVDKCRLESEILKLKDKLLEAEKQIQRLSERCHHHHQHDGASSHSPSSSFSMDANAMEPPFPVEFVVQETGYEHPVFYMSDNNYSQGLEYFNLFG 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6991505 6992771 + Conep12aG0077900.1 Cone12ag0756 449600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone12ag0756 219 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 35 170 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cone12ag0756 219 Gene3D - 51 114 - -
Cone12ag0756 219 SMART HOX_1 51 112 IPR001356 GO:0003677(InterPro)
Cone12ag0756 219 Coils Coil 135 155 - -
Cone12ag0756 219 PRINTS Lambda-repressor HTH signature 88 104 IPR000047 GO:0003677(InterPro)
Cone12ag0756 219 PRINTS Lambda-repressor HTH signature 79 88 IPR000047 GO:0003677(InterPro)
Cone12ag0756 219 ProSiteProfiles 'Homeobox' domain profile. 53 108 IPR001356 GO:0003677(InterPro)
Cone12ag0756 219 FunFam homeobox-leucine zipper protein ATHB-40 47 116 - -
Cone12ag0756 219 CDD homeodomain 53 109 IPR001356 GO:0003677(InterPro)
Cone12ag0756 219 Pfam Homeodomain 54 107 IPR001356 GO:0003677(InterPro)
Cone12ag0756 219 ProSitePatterns 'Homeobox' domain signature. 83 106 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone12ag0756 219 MobiDBLite consensus disorder prediction 22 49 - -
Cone12ag0756 219 SUPERFAMILY Homeodomain-like 53 117 IPR009057 -
Cone12ag0756 219 MobiDBLite consensus disorder prediction 154 177 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0756 Cone-Chr12:6991505 Cone9ag1531 Cone-Chr9:11160124 1.74E-58 dispersed
Cone12ag0756 Cone-Chr12:6991505 Cone8ag0797 Cone-Chr8:8001313 1.49E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
44477 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone12ag0756 K09338 - mdm:103401780 218.394